Thalassospira sp. B30-1: IT971_09010
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Entry
IT971_09010 CDS
T11046
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thad Thalassospira sp. B30-1
Pathway
thad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT971_09010 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thad03019
]
IT971_09010 (rnr)
03016 Transfer RNA biogenesis [BR:
thad03016
]
IT971_09010 (rnr)
Enzymes [BR:
thad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IT971_09010 (rnr)
Messenger RNA biogenesis [BR:
thad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT971_09010 (rnr)
Transfer RNA biogenesis [BR:
thad03016
]
Prokaryotic type
tRNA degradation factors
IT971_09010 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
QPL37406
LinkDB
All DBs
Position
complement(1879415..1881844)
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AA seq
809 aa
AA seq
DB search
MANDTENKTPFPTREQIMEFIDMSPTPVGKREIARAFNIKGAAKIELKKILRDLKIGGDV
VKGRRRFDKPDRLPPVEVLEIIGIDDDGEVIARPNVWKEDYEPPVIYVKTIRRGGPSAPG
IGDKILAKLRYTGKQTYEASIMRVLGSGPQRVLGIFRPNEREGRVVPTDRKDSGEIAVPL
DDHPDLEGGSLVLTEILPGKHFGLRKGRITEVLGNINEPKSISLVSIHARGIPFEFPPEV
ELQARESKATPMGKRTDLRDIPLVTIDGADARDFDDAVWAEPDPDPENEGGWHIMVAIAD
VSWYVRPHDALDREAVKRGNSCYFPDRVVPMLPFELSNGWCSLVPHEDRGCMAVEMWLNR
HGTKLRHKFCRGMMRSAARLTYDQVQRAMDGYPDDTTGPLLETIIKPLYGAYEAFLEARK
GRGVLELDLPERKIELNDKGKIIAIAPRARFDSHKLIEEFMVAANVCAAEELERIKQPCM
YRIHDAPSEEKLEALHEFLEGAGYKLNKGAVLRPRDFNRILEQAKDTPEAELINTVVLRS
QSQAMYSPDNIGHFGLALKKYAHFTSPIRRYADLLVHRALIAGLKLGEGGLPPEDGERFE
QIGEDISGTERRAAMAERDAVDRYVAAYMADKVGAEFPGRVSGVTHFGLFVSLQETGADG
LVPISTLPDDYYVHDAIGHALVGQNRGKTFRLGDDVVVRIAEADAATGSLALRLAGHADI
TDRDLIERPRGRGKRRGSPGDRSHRHGTKPGFRANPKDKSGASGGGPRGGNPGSKPGAKA
AGKKKTTPKKQRKLVASSRVARNTTKRDS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaacgacacagaaaataaaaccccgttccccacacgggaacagatcatggaattc
atcgatatgagccccaccccggtgggcaagcgcgaaattgcgcgcgccttcaacatcaag
ggtgcagcgaagatcgagcttaaaaagatcctgagggatctgaaaatcggtggtgacgtg
gtcaagggccgcagacggtttgacaaacccgaccgcctgccgccggttgaagtactggaa
atcatcggcattgatgatgatggcgaggtaattgcccgtcccaatgtctggaaagaagat
tacgaaccaccggtcatttacgtgaaaacgatccggcgtggcggaccaagcgcaccggga
attggcgataaaatccttgccaaactgcgctataccggcaagcagacctatgaagccagc
atcatgcgggttctgggcagcggcccgcaacgcgttctgggcattttccgccccaatgaa
cgcgaaggccgggttgtgccgacagaccgcaaggatagcggcgagatcgccgtgccgctg
gatgaccatcccgatcttgaaggtggttcgctggttctgaccgaaattctcccaggcaag
cattttggcctgcgcaaaggccggattacagaggttctgggcaatatcaacgaaccgaaa
tcgatcagtctggtatcgatccatgcgcgcggtattccgtttgaattcccgcccgaggtc
gaattgcaggcgcgtgagtccaaggcaacaccaatgggcaagcgcaccgatctgcgcgat
attccgctggtgacgattgacggtgcggatgcgcgcgactttgacgatgccgtctgggcc
gaacccgatcctgatccggaaaacgagggcggctggcacatcatggtcgcgattgccgac
gtgtcctggtatgtgcgtcctcatgatgcgctcgaccgtgaagcggtaaagcgcggcaac
agttgttatttcccggaccgcgtggtgccgatgttgccgtttgaattgtcaaacggctgg
tgttcgctggtaccgcatgaagatcgcggctgtatggccgtcgagatgtggttgaaccgg
cacggcaccaaactgcgacacaaattctgtcgcggaatgatgcgatcagcagcacgcctg
acttatgatcaggttcagcgcgcaatggatggttatcccgacgacacaacggggccattg
cttgaaaccattatcaagccgctttacggcgcgtatgaagcgtttctagaggcgcgcaaa
ggacgtggtgttctggaacttgatcttccggaacgcaagatcgagctgaatgacaagggc
aagatcattgccattgccccacgggcacgctttgacagccacaagctgatcgaggaattc
atggtcgcggccaatgtctgtgcggccgaggaacttgaacggatcaagcaaccctgcatg
tatcgtattcacgatgcgccaagcgaggaaaagcttgaggcccttcatgaattccttgaa
ggggctggatacaagctgaacaagggggcggtcctgcgcccgcgcgatttcaaccgcatc
cttgaacaggccaaagacaccccggaagccgagctgatcaacacggtcgtactgcgtagt
cagtcacaggccatgtatagcccggacaatatcgggcactttggtctggcccttaagaaa
tatgcccatttcacatccccgatccgacgttatgccgatcttctggtgcatcgcgcactg
attgcgggcctgaaactcggcgaaggcggattaccgcccgaagatggcgaacggttcgag
cagatcggcgaagacatttccggcaccgaacgacgggcggccatggccgaacgtgatgcg
gttgaccggtatgtcgcggcctatatggccgacaaggtcggcgcggaattccccggacgt
gtttcgggggtcacgcattttggcctgttcgtatcgcttcaggaaaccggtgccgatggt
ctcgtcccgatttccaccctgcccgatgattattatgtgcatgatgccatcggacatgca
ttggtcgggcaaaatcgcggcaagacattccgtctgggagatgatgttgttgtccgcatt
gccgaggcggatgcagcaaccggatcgcttgcgctgcgtctggcgggacatgccgatatc
accgaccgtgacctgatcgaacggccgcgtggacgcggcaagcgccgtggcagccccggt
gatcgcagccaccgtcacggcaccaaaccgggtttccgcgccaatccaaaggataaaagc
ggtgcatctggtggtggcccccgtgggggaaacccgggcagcaagcctggtgccaaggct
gcaggcaagaagaaaaccacacccaaaaaacagcgcaagctggtggcatcaagccgggtc
gcacgcaacacgaccaaacgcgatagttaa
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