Thalassospira sp. B30-1: IT971_09015
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Entry
IT971_09015 CDS
T11046
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
thad Thalassospira sp. B30-1
Brite
KEGG Orthology (KO) [BR:
thad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thad03032
]
IT971_09015 (topA)
03400 DNA repair and recombination proteins [BR:
thad03400
]
IT971_09015 (topA)
Enzymes [BR:
thad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IT971_09015 (topA)
DNA replication proteins [BR:
thad03032
]
Prokaryotic type
DNA Topoisomerases
IT971_09015 (topA)
DNA repair and recombination proteins [BR:
thad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IT971_09015 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QPL37407
LinkDB
All DBs
Position
complement(1881893..1884544)
Genome browser
AA seq
883 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDPDNEFAMVWETDGRSEK
QIREIASAARDADTIYLATDPDREGEAISWHILEVLEQKKLLRGRDIHRVVFHEITKKAV
TDAIANPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER
EIEIEAFRPDEYWSLEAGFKVPEGNFTARLTHLNGEKLDKLALGNEGAATIAKEKVESRS
YTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRLYEGVDIGGETVGLI
TYMRTDAVVLSGEALAAARRLISKDYGENYLPPSARSFANKAKNAQEAHEAIRPTDLFRR
PDQVARHLDKDQLALYTLIWKRTVACQMEDAKFDQVAVDLSSNDNHVVLRANGSVVKFDG
FLKLYQEGKDDEAEDENDRRLPPLNEGQKPDLGKVSIDQHFTQPPPRYTEASLVKKMEEL
GIGRPSTYASIISVLQDRDYVTLDKRRFIAQDRGRLVTAFLSKFFERYVQYNFTADLENQ
LDDVSNGSLAWRDVLNQFWSAFKGNVDEAKELKITDVLDALQVMLENYLFPTREDGTDPH
KCPKCSEGTLSLKLGKFGAFLGCSNYPECNFTRPLVANENGGDSELDSGPKVLGIDKETG
KEITLRKGPYGVYVQLGEEEEVEGKNGKPKKVKPKRTSLPKGLEPSVVDLTKAEELLTLP
RLVGVFPDTGEEIKANVGRFGPYVQAGSIFASLKAEDDVLTVGENRAIALIADKREKAGK
EIGKHPDDGEPIFLADGRWGPFVKHKKTNANLPRDTNKEDVTLEMAIAALKEKEAKSGKP
AKATKTAAKKTTTKKAAAKKPAAKKTAAKKTAAKKTIRKEAAN
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgtcatcgtcgaatccccggccaaagccaagacgatcaataaatatctaggt
gacgattacaaggtgctggcctcgtttggtcacatccgcgatcttccgtcaaaagatgga
tcagttgatcccgacaacgaatttgcgatggtctgggaaaccgatggccgttccgaaaaa
cagatccgcgagatcgcatcggctgcacgcgatgccgataccatctatctcgcgactgac
ccggatcgcgaaggggaagcgatttcatggcatattctggaagttctggaacagaaaaag
cttttgcgcggtcgcgatattcatcgcgttgtgttccacgagatcacgaaaaaagcggtt
accgacgcgattgccaatccgcgcgagcttaatcaggaactggtcgatgcctatctggcg
cgccgtgcccttgattatctggtgggctttaacctgtcgccggttctgtggcgcaaattg
cccggatcacggtcggccggtcgtgttcagtcggtcgcccttcgcctgatttgcgagcgc
gagattgagatcgaagcattccgccccgacgaatactggtcactcgaagccggtttcaag
gtgcctgagggcaacttcaccgcgcgtctgactcatctgaacggtgagaagcttgataag
ctggcactgggcaatgagggtgcagcgacgattgccaaggaaaaggtcgaaagccgcagc
tatacggtttcaaaggtcgagcgcaaagacgtcaaacgtcgtccgcagccgcctttcacc
acctcgaccctgcaacaggaagcgtcacgcaagctgggctttggcgcgaaacgcaccatg
cagttggcacagcgcctttatgaaggggttgatatcggtggcgagacagttggcctgatc
acctatatgcgtaccgatgcggtcgtgctgtcgggcgaggcactggcagcagcacgccgc
ctgatttccaaggattacggtgaaaattacctgccaccaagtgcgcgcagctttgccaac
aaggccaagaacgcgcaggaagcccacgaagccatacgcccgacggacctgttccgtcgc
cctgatcaggttgcgcgtcacctggataaggatcagcttgcgctttataccctgatctgg
aaacgcaccgtcgcctgccagatggaagatgccaaattcgatcaggtcgcggttgatctg
tcatcgaatgacaatcacgtggttctgcgcgccaatggttcggtcgtgaaattcgacggt
ttcctgaaactgtatcaggaaggcaaggatgacgaggcagaagacgaaaatgatcgtcgt
ctgccacctttgaacgaaggccagaagcccgatcttggcaaagtcagtatcgaccagcat
ttcacacagcccccgccccgttataccgaggcgagcctggtcaagaaaatggaagaactg
ggaattggccgtccgtcgacctacgcatcgatcatttcggtgttgcaggatcgcgattat
gtgacgctggacaagcgccgctttatcgcacaggaccgcggtcgtctggtcacggcgttc
ctgtcgaaattcttcgaacgttacgtgcagtacaactttacggccgatctggaaaaccag
cttgatgacgtttcaaacggaagccttgcctggcgtgatgtgctgaaccagttctggtcg
gccttcaagggcaatgttgacgaagccaaggaactgaaaatcaccgatgtgcttgatgcg
cttcaggtgatgctggaaaactatctgttcccgacgcgcgaagatggtacggacccgcat
aaatgcccgaaatgttccgaagggacgctgagcctcaagcttggtaaattcggcgcattc
cttggctgttcgaattatccggaatgcaactttacccgtccgctggttgccaatgaaaat
ggcggtgattccgaacttgattccgggcccaaggtgcttggcatcgacaaagaaaccggc
aaggaaatcacgctgcgcaaagggccgtatggcgtttatgtgcaactgggtgaagaagaa
gaagttgaaggcaagaacggcaaacccaaaaaggtcaagccgaagcggacgtcgcttccg
aaaggtctggagccatcggttgtcgatctgaccaaggcggaagaattgctgacattgccg
cgtctggtgggcgtattccccgatacgggcgaggaaattaaagccaatgtcggccgtttt
ggcccctatgttcaggcgggcagcatttttgcatcgcttaaggccgaggatgacgttctg
acggttggagaaaaccgtgccattgccctgattgcggataagcgcgaaaaagcaggcaag
gaaatcggcaaacatcccgatgacggcgaaccaatattcctagccgatggccgctggggt
ccgtttgtcaaacacaagaaaaccaatgccaatctgccgcgtgacaccaacaaggaagat
gtcacgctggaaatggccattgcggcactgaaggaaaaggaagccaaatcgggaaaaccg
gccaaggcaaccaaaaccgcagcaaagaaaacaacgacgaaaaaagcggcagccaagaag
ccagccgccaaaaagaccgctgcaaagaaaaccgcagcgaaaaaaacaatcaggaaagag
gcggcgaactaa
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