KEGG   Thalassospira sp. B30-1: IT971_10500
Entry
IT971_10500       CDS       T11046                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
thad  Thalassospira sp. B30-1
Pathway
thad02024  Quorum sensing
thad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IT971_10500 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    IT971_10500 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thad03019]
    IT971_10500 (hfq)
   03036 Chromosome and associated proteins [BR:thad03036]
    IT971_10500 (hfq)
Messenger RNA biogenesis [BR:thad03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     IT971_10500 (hfq)
Chromosome and associated proteins [BR:thad03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    IT971_10500 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM Sde2_N_Ubi_vert
Other DBs
NCBI-ProteinID: QPL37682
LinkDB
Position
complement(2156717..2156974)
AA seq 85 aa
MAEKSQNVQDVFLNYCRKNKTPVTVFLVNGVKLQGIITWFDNFSVLLRRDAHTQLVYKHA
ISTVMPTTPIKLFDPSQPATDEENS
NT seq 258 nt   +upstreamnt  +downstreamnt
atggcggaaaaatcacaaaatgttcaggacgtattcctgaattattgccgtaaaaacaaa
acgccggttaccgtgtttctggtcaacggagtcaaattgcagggcattattacctggttt
gacaatttctctgttttgctgcggcgcgatgctcacacccagctcgtttacaaacacgcg
atttcgacggtaatgccgacgacaccgattaaactgtttgatccgagccagcctgcgacg
gacgaagaaaatagctga

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