Thalassospira sp. B30-1: IT971_19760
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Entry
IT971_19760 CDS
T11046
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thad Thalassospira sp. B30-1
Pathway
thad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT971_19760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thad03019
]
IT971_19760
Enzymes [BR:
thad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IT971_19760
Messenger RNA biogenesis [BR:
thad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IT971_19760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QPL35311
LinkDB
All DBs
Position
complement(4237374..4239185)
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AA seq
603 aa
AA seq
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MTNFEGLNLIEPLLRNVEASGFTAPTEIQAKTIPALLEGRDLMGISQTGGGKTAAFCLPL
LQRLAENPKRPAPGQPRALILAPTRELVNQIGQCLRDFKKGIRLFSSVVYGGSPMGPQIQ
ELRRGVDILVATPGRLLDHMSRNTIRFDDIEVFILDEADRMLDMGFSEDVLTVAEVLPRD
HQTVMFSATMPPAVKHLTDRLLNNPVKVETAPQSSVTERVTQRGMFVKRHDKTSLLVQLL
KRQESERVLVFTKTKADADELSFQLRDEGVDTDAIHGDKQQRIRQKILRNFRNGQFPVLI
ATDVAARGIDVPGITHVINYDLPTDPENYVHRIGRTGRGSAEGIAISFCEPRDVRHLRNI
ERVIGQQVEIDEDHEFHSAPPARSSGGGGRGGFGGGRDGGRGRGGFGGGRDGGRDAGRGG
RGGFAGGRDGARDGARSFGGPRRAEGDRDGVRRFEGDREGGRAFGGDRDGGRDGGRRFGQ
SDQPRGDRGGDRPARSDRNDRGGDRFDRKPRFDRAAADQRPDRAERSDRTERTDRGTNFR
PRGEGAPARDGERRFADKPRGERGFKNRDRDTRGRDFSDRPRRAEGGRGEVRGGNQGMKR
RSA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgactaattttgaagggctcaaccttatcgagcccctgctgcgcaacgttgaagcttct
ggtttcaccgcaccgaccgagattcaggcaaaaaccattccggctttgcttgagggtcgt
gacctgatgggtatttcccagacgggtggtggtaaaaccgctgctttctgccttccgctg
ttgcagcgccttgccgagaacccgaaacgcccggcaccgggccagccgcgcgcgcttatt
cttgcgccgacgcgtgaactggtaaaccagatcggtcagtgcctgcgtgatttcaaaaaa
ggcattcgcctgttctcttctgttgtttacggtggctcgccgatgggcccgcagattcag
gaactgcgccgtggcgttgacattctggttgcgaccccgggtcgtctgcttgaccacatg
tcacgcaataccattcgttttgatgacatcgaagtcttcattctcgacgaagccgaccgt
atgctcgatatgggcttctcggaagacgttctgaccgttgccgaagtgctgccgcgtgat
caccagacggtgatgttctcggcaaccatgccgccggctgtcaaacatctgaccgaccgt
ttgctgaacaatccggttaaggttgaaaccgcgccgcagtccagcgtgaccgagcgtgtg
acccagcgcggcatgttcgtgaaacgtcacgacaagacctcgcttctggttcagttgctg
aaacgtcaggaaagcgaacgcgttctggttttcaccaaaaccaaagccgatgcggacgag
ctttcgttccagctgcgcgatgaaggtgtcgataccgacgccatccatggtgacaagcag
cagcgtattcgccagaaaatcctgcgtaacttccgtaatggccagttcccggtcctgatt
gcaactgacgttgctgcacgtgggattgacgttccgggcatcacgcatgtcatcaactat
gacctgccaaccgatccggaaaactatgtgcaccgcattggccgtaccggtcgcggcagt
gccgaaggcatcgcgatttcgttctgcgagccgcgtgacgttcgtcatctgcgcaacatc
gaacgcgtgatcggccagcaggtcgagatcgacgaagatcatgaattccattcggctcct
ccggcccgttcgtcaggtggtggcggtcgcggcggatttggcggtggccgtgatggcggt
cgtggtcgtggcggtttcggcggcggccgtgatggtggtcgtgatgccggccgtggtggt
cgcggtggatttgctggtggccgtgatggtgcccgcgacggcgcccgttcattcggtggt
ccacgtcgtgccgaaggcgaccgtgatggtgtgcgccgtttcgaaggggatcgcgaaggc
ggtcgggcttttggtggtgatcgtgacggtggtcgtgatggcggccgtcgttttggccag
tcagatcagccgcgtggtgatcgcggtggtgatcgtccggcccgttcggatcgcaacgac
cgcggtggtgaccgttttgatcgcaagccgcgctttgatcgcgctgctgccgaccagcgc
cctgatcgtgcagagcgttctgatcgtaccgagcgcacggaccgtggcaccaacttccgc
ccgcgtggcgaaggtgcaccggcacgtgatggcgagcgtcgttttgctgacaaaccacgt
ggcgaacgcggtttcaaaaatcgagatcgtgatacccgcggtcgtgatttcagtgatcgt
ccgcgccgtgccgaaggtggtcgtggtgaagtccgtggtggaaaccagggcatgaagcgc
cgttccgcctaa
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