Thauera sp. GDN1: CKCBHOJB_00188
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Entry
CKCBHOJB_00188 CDS
T09925
Symbol
cho_1
Name
(GenBank) Excinuclease cho
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03030
DNA replication
thag03430
Mismatch repair
thag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKCBHOJB_00188 (cho_1)
03430 Mismatch repair
CKCBHOJB_00188 (cho_1)
03440 Homologous recombination
CKCBHOJB_00188 (cho_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thag03032
]
CKCBHOJB_00188 (cho_1)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_00188 (cho_1)
Enzymes [BR:
thag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKCBHOJB_00188 (cho_1)
DNA replication proteins [BR:
thag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKCBHOJB_00188 (cho_1)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKCBHOJB_00188 (cho_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
GIY-YIG
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
WEN40660
LinkDB
All DBs
Position
complement(208527..209930)
Genome browser
AA seq
467 aa
AA seq
DB search
MPPTLRHFPGGLAFVDIETTGGPAQRESITEIGIVQVDADGVREWSTLVRPESRIPDYIQ
RLTGIDDAMVAGAPRFAEIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDIRPQVL
CTVKLSRRLFPEYRRHGLDHLIERHGLVVADRHRALGDAQLLWQFWQKLHERFAPGHIEA
MVRELIGHPSLPPHLDPEHIAGLPDTPGVYLFYGERGDATGGELPLYIGKSTRLRSRVLS
HFAADHTSDRELSLSQQVRHIEWIATAGEIGALLKEAELVKRLQPTHNRQLRRNRELCTW
RLATDIVGDRRLELVHAGDLDFGRRDDLYGFFRSRREATNRLRALARDHALCPPLLGLDK
HPQGARCFDFQLKRCRGACHGGESPQAHALRLIEALHALKVEHWTWPGPIGLREGEAIHV
VDAWRWLGTATDEAMLADLLESGRPAFDLDIYKILVKAAKRLPILQL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgccccccaccctccgccacttccccggcggcctcgccttcgtcgacatcgagaccacc
ggcggccccgcccagcgcgaatcgatcaccgagatcggcatcgtccaggtcgacgcggac
ggcgtgcgcgagtggtccacgctggtccggcccgagtcgcgcatccccgactacatccag
cgcctgaccggcatcgacgacgccatggtcgcgggcgcgccgcgcttcgccgagatcgcc
gacgaggtcttcgaccgcctcgacggccgcctcttcgtcgcccacaacgcacgcttcgac
cacggccacctgcgcgccgccttccgccgcgccggactcgacatccggccgcaggtgctg
tgtaccgtcaagctgtcgcgccggctgtttcccgagtaccgccgccacggtctcgaccac
ctgatcgagcgccacggcctggtggtggccgaccgccaccgcgcgctcggcgacgcccag
ctgctgtggcagttctggcagaagctgcatgaacgcttcgcgcccggacacatcgaggcc
atggtgcgcgagctgatcggccaccccagcctgccgccccacctcgaccccgaacacatc
gccggcctgcccgacacacccggcgtgtatctgttctacggcgagcgcggcgatgcgacg
ggtggcgagctgccgctctacatcggcaagagcacccgcctgcgcagccgcgtgctgtcg
cacttcgccgccgaccacaccagcgaccgcgagctgagcctcagccagcaggtgcgccac
atcgagtggatagcgaccgccggcgagatcggcgccctgctgaaggaggccgaactcgtc
aagcgcctgcagcccacccacaatcgccagctgcgccgcaaccgcgagctgtgcacctgg
cggctggccaccgacatcgtcggcgaccggcggctcgaactggtgcacgccggcgacctc
gacttcggccgccgcgacgacctctacggcttcttccgctcccgccgcgaagccaccaac
cgcctgcgcgcactcgcccgcgaccacgccctgtgcccgcccctgctcggcctggacaag
cacccccagggcgcgcgctgcttcgacttccagctcaagcgctgccgcggtgcctgccac
ggcggcgaatccccccaggcccacgccctgcgcctgatcgaggccctgcacgcgctgaag
gtcgagcactggacctggccgggcccgatcggcctgcgcgagggcgaggccatccacgtc
gtcgacgcttggcgctggctcggcaccgccaccgacgaggccatgctcgccgacctcctg
gaaagcggccgccccgccttcgatctcgacatctacaagatcctggtcaaggcggcgaaa
cggctgccgatcctccagctctga
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