Thauera sp. GDN1: CKCBHOJB_00306
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Entry
CKCBHOJB_00306 CDS
T09925
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
thag
Thauera sp. GDN1
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_00306 (sbcC)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CKCBHOJB_00306 (sbcC)
Archaeal homologous recombinant proteins
CKCBHOJB_00306 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
WEN40773
LinkDB
All DBs
Position
329654..332836
Genome browser
AA seq
1060 aa
AA seq
DB search
MKPLKLSLQAFGPFAAREEVDFTLLPSGCLFLIAGPTGAGKTSILDGITYALYGDTSGGE
RSAREMRSHHADASVQTEVGFEFALGARRYLVKRVPEQERAALRGDKLVKVLAKAELYRL
EPDGETWTPLAHKTTEVTALIEDLLGFKAEQFRQVVLLPQGQFRKLLAASSAEREKILET
LFGTATYKRLQEALKVEAAALRERGEQAALQRRTLLEQAGADSVEALLARREVLQSELAT
LADGEQQARAEDAAARAALQQGQAVEAQFAEAAAAGAALEALEAGKPELDAQRLRLEQAR
RALQVVPAESALLGARRSVDEVRAREARVASESTEAARRLSAAEAALQAETARAVEREAA
QREVLRLEALAEAVTRLAQAEAETQRCELARVAADKVLASATAQQQTLATRRAELAARIE
ALQPIAADVSALELRLQQAEQHVRAHAALAAARKQLALRESSEAKARQACKDARRAATAA
STAFSMLDNRWRQAQAAILARHLHDGAPCPVCGSADHPAPARHAGELPSEQALQDAAERV
READTAFETARQALNTAELARATAAAEVDTRAAALTLAADGAAEVAAEVAQLRRHLDAAR
AAAVELAPLREQVAALDADLARAAMAYEQARAQSAEAASAARSAQHVADERRAGVPEALR
TPAALQAALAGAQAARQRLDHALQQAQIAHGEAASRAAALRAQHATLGEAVQAAGLRVEE
AGVQFADALGAAGFWPMGADAGIGSGALGRDDVAAVSQPSFAGKPAPTEGGRSDPGFAQA
EAVWRAALMPAERIAALEAMIREADHRRAAAHERAERATRAIAGVVRPDLAALDARAGAA
RAAIEAVLDRLARARSALATLADTLARVEEIARESGAIETEYRVVGHLADIANGSNGRNL
TFQRYVLAALLDDVLRAASLRLAAMSRGRYQLQRREDLADARRAGGLDLEVFDEYTGRTR
PASTLSGGEGFMASLSLALGLSDVVQAYAGGVQLDTLFIDEGFGSLDPESLDMAMRALID
LQQRGRMVGVISHVEEMKQQIDVAIEVVPGTRGSRVRIRA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgctcaagctcagcctgcaggccttcggtcccttcgccgcgcgcgaggaggtg
gatttcaccctgctgccgtccggctgcctgttcctgatcgccggccccaccggcgccggc
aagacctccatcctcgacggcatcacctacgcgctctatggcgacacctcgggcggcgag
cgcagcgcgcgcgagatgcgcagccaccatgcagacgccagcgtgcagaccgaggtcggg
ttcgagttcgcgctcggcgcgcgccgctacctcgtcaagcgcgtgcccgagcaggagcgt
gccgccttgcgcggcgacaagctggtcaaggtgctcgcgaaggccgagctgtatcgactg
gagccggacggcgagacgtggacgccgctggcgcacaagaccaccgaagtcacggcgctg
atcgaggacctgctcggcttcaaggccgaacagttccgccaggtcgtgctgctgccccag
ggccagttccgcaagctgctggcggcgagttcggccgagcgcgagaagatcctcgagacc
ctgttcggcaccgccacctacaagcgcctgcaggaggccctgaaggtcgaggctgcggcg
ctgcgcgagcgcggcgagcaggccgcgctgcagcgccgcaccctcctggagcaggccggg
gccgactccgtcgaggcgctgctcgcccgccgcgaggtcttgcagtccgagctggccaca
ctcgccgacggcgagcagcaggcgcgcgccgaggacgccgccgcacgcgccgccctgcag
caggggcaggcggtcgaggcgcaattcgccgaggcagcggcagccggtgcggcgctcgag
gcgctggaagcgggcaagcccgagctcgacgcccagcgcctgcgcctggagcaggcgcgc
cgtgcgctgcaggtcgtgccggccgaaagcgcgctgcttggcgcgcgccgcagcgtcgac
gaagtccgcgcgcgtgaagcgcgcgtcgccagtgaatccaccgaagccgcccgccgtctg
agtgcagcggaagccgcgctgcaggccgagaccgcgcgcgccgtcgagcgcgaggccgcg
cagcgcgaggtgctgcgcctggaagcgctcgccgaggcggtcacgcgcctggcccaggcc
gaggccgagacacagcgctgcgagcttgcccgtgtcgctgccgacaaggtgctcgccagc
gccaccgcgcagcagcagacgctggccacccgccgcgcggaactcgccgcccgcatcgag
gccttgcagccgatcgccgccgatgtctccgcgctcgaactgcgcctgcagcaggccgag
cagcacgtccgcgcgcacgccgcgctggccgccgcgcgcaagcagctcgcgttgcgcgag
tcgagcgaggcgaaggcccgccaggcctgcaaggacgcccggcgcgccgccaccgcggcc
agcaccgccttctccatgctcgacaatcgctggcgccaggcccaggccgccatcctcgcc
cgccacctgcacgacggcgcgccctgcccggtgtgcggcagcgccgatcaccccgcgccc
gcccgccacgcgggcgagttgcccagcgagcaggcgctgcaggatgcggccgagcgtgtg
cgcgaagcggacaccgcattcgaaaccgcccgtcaggcgctcaacaccgccgaactggcg
cgcgccacggccgcggccgaagtcgacacgcgcgcggccgcgctgacgctcgcggccgat
ggcgccgccgaggtcgccgccgaagtcgcccaactgcgccgccacctcgatgccgcccgc
gccgccgcggtggagctcgcgccgctacgcgagcaggtggccgcgctcgacgccgacctc
gcccgcgccgccatggcgtacgaacaggcgcgcgcccagtccgccgaggccgccagcgcg
gcgcgttcggcgcagcacgtcgccgacgagcgtcgcgccggtgtgccggaagccttgcgc
acgccggccgcgctgcaggcggcgctcgcgggcgcgcaggccgcacgccagcgtctcgac
cacgccctgcagcaggcgcagatcgcgcacggcgaagccgccagccgcgcggctgccctg
cgcgcgcagcacgccacgctcggcgaggcggtgcaggcggcagggttacgcgtcgaggag
gcgggcgtccagttcgccgacgcgcttggtgccgcgggcttctggccgatgggtgctgat
gccggtatcggcagtggcgccttggggagggacgatgttgcggcggtgagccagccttcg
ttcgcgggcaagcccgctcccacagagggtggccgcagcgaccctggcttcgcccaggcc
gaggcggtgtggcgcgccgcgctgatgcctgcggagcggatcgcggctctcgaggccatg
atccgcgaggccgaccaccgccgcgccgcggcccatgaacgcgccgaacgcgccacgcgc
gccatcgccggcgtggtgcgccccgacctcgccgccctcgacgcccgcgccggtgccgcc
cgtgccgcgatcgaggcggtgctcgaccgcctcgcccgcgcccgcagcgcgctcgccacg
ctcgccgacacgctcgcccgggtcgaggagatcgcgcgcgaatccggcgccatcgagacc
gaataccgcgtcgtcggccacctcgccgacatcgccaacggcagcaacgggcgcaacctc
accttccagcgctacgtgctcgcggcgctgctcgacgacgtgctgcgcgccgcctcgctg
cgtctggcggcgatgagccgcggccgctaccagctccagcgccgcgaggacctggccgac
gcccgccgcgccggcggcctcgacctcgaggtcttcgacgaatacaccggccgcacccgc
ccggcgagcacgctgtccggcggcgaaggcttcatggcctcgctgtcgctcgcgctgggc
ctctccgacgtggtccaggcctacgccggcggcgtgcagctcgacaccctgttcatcgac
gaaggcttcggcagcctcgaccccgagtcgctcgacatggcgatgagggcgctgatcgac
ctgcagcagcgcgggcgcatggtgggcgtgatctcgcacgtcgaggagatgaagcagcag
atcgacgtggcgatcgaggtggtgccggggacgagagggagccgggtgcggatccgcgcc
tga
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