Thauera sp. GDN1: CKCBHOJB_00388
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Entry
CKCBHOJB_00388 CDS
T09925
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03420
Nucleotide excision repair
thag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKCBHOJB_00388 (pcrA)
03430 Mismatch repair
CKCBHOJB_00388 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_00388 (pcrA)
Enzymes [BR:
thag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKCBHOJB_00388 (pcrA)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKCBHOJB_00388 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
CKCBHOJB_00388 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
AAA_12
HHH
Motif
Other DBs
NCBI-ProteinID:
WEN40855
LinkDB
All DBs
Position
436502..438631
Genome browser
AA seq
709 aa
AA seq
DB search
MPPSSSPAAAPSAAVSDRLAPDPLARLNPAQRAAVEHGITAGAATAPQPAPPLLVIAGAG
SGKTNTLAHRVAHLIAHGADPGRILLLTFSRRAADEMGRRVRRILAQAAASRPGLAQAEL
HWSGTFHAIGARLLRDYAGRIGLDPGFTIHDREDSADLMNLVRHELGLSATKQRFPQKGT
CLAIYSAAVNTQAPLAELLQASFPWCAEWADALKRLFRAYVEAKQAQQVLDYDDLLLYWA
QMVAEPELGAEIGGLFDHVLVDEYQDTNALQAAILLAMKPDGRGLTVVGDDAQSIYAFRG
ATVRNILDFPAAFEPPARVVTLEQNYRSTRPILDAANAVIALAAERFTKNLWSERESAQR
PRIVSVKDDADQAAFVVDTVLARREEGLKLKQQAVLFRASAHSARLEIELTRRNIPFVKF
GGLRFLEAAHVKDVLALLRWAENPRDRISGFRAIQLLAGIGPKTAGRVLDNVCAAPAGCM
LLDEQPVPEAARAGWREFAALIDGLAERPAWPADFELACRWYEAQMPRLYDDFAVRVIDV
QQLARIAASSPSRQRFLTELTLDPPSATSGEAGMPLLDEDYLILSTIHSAKGQEWNAVSV
LNVVDGCIPSDVATRNSAEIEEERRLLYVAMTRARDNLDLVVPQRFYVTQQMGMGDRHVY
AGRTRFIPNRLLGNFEQIGWPPPPPELQGSPASRQAAIDLAAKMRDMWR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccgccttcgtcttctcctgctgccgcaccctctgcggcagtctccgaccgtctcgct
cccgacccgctcgcccgcctcaatccggcgcagcgcgcggcggtcgagcacgggatcacg
gcgggggcggcgaccgccccgcagccggcgccgccgctgctggtcatcgccggcgccggc
tcgggcaagaccaacaccctggcccaccgcgtggcccacctgatcgcccacggcgccgat
cccgggcgcatcctgctgctgaccttctcccggcgtgcggcggacgagatggggcggcgg
gtgaggcgcatcctggcgcaggcggccgccagccggccggggctggcgcaggccgagctg
cactggtcgggcaccttccatgccatcggcgcgcgcctgctgcgcgactacgcggggcgg
atcgggctcgaccccgggttcacgatccacgaccgcgaggactcggccgacctgatgaac
ctggtgcgccacgagctcggcctgtcggcgaccaagcagcgctttccgcagaagggcacc
tgcctggcgatctactcggcggcggtcaatacccaggccccgctcgccgaactgctgcag
gcgagtttcccgtggtgcgcggagtgggcggacgcgctcaagcgcctgttccgcgcctac
gtcgaggccaagcaggcgcagcaggtgctcgactacgacgacctgctgctgtactgggcg
cagatggtggccgagccggaactcggcgccgagatcggcggcctgttcgatcacgtgctg
gtcgacgagtaccaggacaccaacgcgctgcaggcggccatcctgctggcgatgaagccc
gacggccgcggcctgaccgtggtcggcgacgacgcgcagtcgatctacgcctttcgcggc
gcgacggtgcgcaacatcctcgactttcctgccgccttcgaaccgcccgcgcgggtggtg
accctggagcagaactaccgctcgaccaggcccatcctggacgcggccaacgcggtgatc
gcgctcgccgccgagcgcttcaccaagaacctgtggtccgagcgcgaatccgcccagcgc
ccgcgcatcgtttcggtcaaggacgacgccgaccaggccgctttcgtcgtcgataccgtg
ctggcgcggcgcgaggaggggctcaagctcaagcagcaggcggtgctgttccgcgcctcg
gcgcacagcgccaggctggagatcgagctcacccggcgcaacatcccgttcgtgaaattc
ggcgggctccgcttcctcgaggccgcccacgtcaaggacgtgctcgcgctgctgcgctgg
gcggagaatccgcgcgaccgcatctccggcttccgcgccatccagctgctcgccggcatc
ggcccgaagaccgccggccgcgtgctcgacaacgtctgcgccgcgcccgcgggctgcatg
ctgctggatgagcaaccggtgccggaggcggcgcgcgcgggctggcgcgagttcgccgcg
ctgatcgatggcctggccgaacgccccgcctggccggcggatttcgagctcgcctgccgc
tggtacgaggcgcagatgccgcgcctgtacgacgacttcgcggtgcgcgtgatcgacgtc
cagcagctcgcgcgcatcgccgcgtcctcgcccagccgccagcgcttcctcaccgagctc
accctcgacccgcccagcgccacgagcggcgaggccggcatgccgctgctcgacgaggac
tacctgatcctgtcgaccatccactccgccaagggccaggaatggaacgcggtgagcgtg
ctcaacgtggtcgatggctgcatcccgtccgacgtcgccacccgcaacagcgccgagatc
gaggaagagcgccggctgctgtacgtggcgatgacgcgggccagggacaacctcgacctc
gtcgtgccgcagcgcttctacgtcacccagcagatgggcatgggcgaccgccacgtgtat
gccgggcgtacgcgcttcatccccaaccgcctgctcggcaacttcgagcagatcggctgg
ccgcctccgccgcccgaactccagggctcgccggcctcgcgccaggcggcgatcgacctc
gcggcgaagatgcgcgacatgtggcggtga
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