Thauera sp. GDN1: CKCBHOJB_00521
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Entry
CKCBHOJB_00521 CDS
T09925
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
thag
Thauera sp. GDN1
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thag03016
]
CKCBHOJB_00521 (rnb)
Enzymes [BR:
thag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CKCBHOJB_00521 (rnb)
Transfer RNA biogenesis [BR:
thag03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CKCBHOJB_00521 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
WEN40987
LinkDB
All DBs
Position
complement(592357..594264)
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AA seq
635 aa
AA seq
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MFVLYEEDGAFKAGTILADNEATLQVENTHGKRVKLKRAHVLMEFREPGPSELLARAEAG
AEELDVEFLWEVCGDDEFAFADFAAEYQGRTPTAVESAALLLRLHSAPIWFHRKGKGRFR
KAPADILQAALAGLEKKRQQAAAIEHMRAELVEGRLPPELAALLPQALYRPDRNRPEIKA
LEAACVDSGLSAARLLLKCGALASSYDFHFNRFLFEHFPEGPAFPAFEPATMPAGLQRAE
VAAFSIDDASTTEIDDAFSVTPRAEGGWRIGIHIAAPALGFARGSGLDAIARRRLSTVYM
PGNKITMLPDEVVQGFTLAAGRDCPAVSLYLDVTPGLAIVGEHSRVEMVPIVANLRHHDI
EPVFNDETVHSGLPDFAWKQELSLLWDLATVLEAGRGKAGGNEDRIDFGFSVDWTEETAD
GPGRVSISRRLRGSPMDKLVAELMIYANMTWGKLLDASGIPGLYRAQGGGKVRMTTVAAP
HEGLGVDCYAWSSSPLRRYVDLVNQWQIVAVLQDTAPAFAPKSADLMAALRDFELTYAEY
AEFQRGMERYWCLRWLRQHGRGEVEAVVLRENVVRLTEIPLVFRVPSMPLQIPGSRVKLC
VEHTDLLDVEVEARFVAILSEPDPETVTEAGFGFA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgctgtatgaagaggacggggccttcaaggccggcacgatcctcgccgataac
gaagccacgctgcaggtcgagaacacccacggcaagcgggtgaagctcaagcgcgcccat
gtgctgatggagttccgcgaacccggcccgtccgagctgctcgcccgcgccgaggcggga
gccgaagaactcgatgtcgaattcctatgggaagtgtgcggcgacgacgaattcgccttc
gccgacttcgccgccgaataccagggccgcacgccgaccgcggtcgagtccgccgccctg
ctgctgcgcctgcattcggcgccgatctggttccaccgcaagggcaaggggcgcttccgc
aaggcgccggccgacatcctccaggccgcgctcgccggcctggagaagaagcgccagcag
gcggcggccatcgagcacatgcgcgcggaactggtcgaaggccgcctgccgcccgaactc
gccgcgctgctgccgcaggcgctctaccgccccgaccgcaaccgccccgagatcaaggcg
ctcgaagccgcctgcgtggacagcgggctgtcggccgcgcgcctgctgctcaaatgcggc
gcgctcgcctccagctacgacttccacttcaaccgcttcctgttcgagcacttcccggaa
gggccggcatttccggccttcgagccggcgacgatgccggccggcctgcagcgcgccgag
gtcgccgcgttctcgatcgacgacgcctcgaccaccgagatcgacgacgccttctcggtc
acgccgcgcgccgaaggcggctggcgcatcggcatccacatcgccgcaccggccctcggc
ttcgcgcgcggctccggcctggacgcgatcgcgcgccgccggctgtccaccgtttacatg
ccgggcaacaagatcaccatgctgcccgacgaggtggtgcagggcttcacgctcgccgcc
ggccgcgactgcccggcggtgtcgctgtacctggacgtgacccccggcctggccatcgtc
ggcgagcacagccgggtcgagatggtgccgatcgtcgccaacctgcgtcaccacgacatc
gagccggtgttcaacgacgagaccgtgcacagcggcctgcccgacttcgcgtggaagcag
gagctgtccctgctgtgggacctcgcgaccgtgctcgaggccgggcgcggcaaggccggc
ggcaacgaggaccgcatcgacttcggcttcagcgtggactggaccgaagagaccgccgac
ggcccgggccgggtcagcatcagccgccgcctgcgcggctcgccgatggacaagctggtc
gccgagctgatgatctacgccaacatgacctggggcaagctgctcgacgcctcgggcatc
cccggcctgtaccgcgcccagggcggcggcaaggtgcgcatgaccacggtcgccgcgccg
cacgagggcctcggcgtggactgctacgcgtggtcgagctcgccgctgcggcgctacgtc
gatctggtcaaccagtggcagatcgtcgccgtgctgcaggatacggcaccggccttcgcg
cccaagtccgccgacctgatggcggcgctgcgcgacttcgagctcacctacgccgagtac
gccgagttccagcgcggcatggagcgctactggtgcctgcgctggctgcgccagcacggc
cgcggcgaggtcgaggccgtcgtgctgcgcgagaacgtggtgcgcctgaccgagatcccg
ctcgttttccgcgtgccgtcgatgccgctgcagatccccggcagccgggtgaagctctgc
gtcgagcacaccgacctgctcgacgtcgaggtcgaggcgcgcttcgtggcgatactgtcc
gagcccgatcccgagacggtcaccgaggccggcttcggcttcgcctga
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