Thauera sp. GDN1: CKCBHOJB_00672
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Entry
CKCBHOJB_00672 CDS
T09925
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKCBHOJB_00672 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thag03019
]
CKCBHOJB_00672 (recQ)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_00672 (recQ)
Enzymes [BR:
thag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKCBHOJB_00672 (recQ)
Messenger RNA biogenesis [BR:
thag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKCBHOJB_00672 (recQ)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKCBHOJB_00672 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Helicase_Sgs1
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
WEN41131
LinkDB
All DBs
Position
complement(749258..751171)
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AA seq
637 aa
AA seq
DB search
MRAMFADPSSPQTAPPAARSPASGAFVARRDESLADAAHRVLEHVFGYPAFRGEQQQIVE
QVAGGGDALVLMPTGGGKSLCYQIPALLRQGTAIVVSPLIALMQDQVSALVEAGVQAAFL
NSSLDAERARAVERALWDGALDLLYVAPERLMTPRFLDQLDHLRDTGRLALFAIDEAHCV
SQWGHDFRPEYLQLSILPERYPATPRIALTATADRQTREEIAERLNLQHARRFVSSFDRP
NIRYTIVDKNDARRQLLDFIREECPGQAGIVYCLSRRKVEETAAWLQEQGLNALPYHAGM
TQEIRAEHQTRFLREDGLIMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRD
GLPAQAWMAWGAQDVVQQRRMIDESEANEEFKRLARNRLDVLVGLVEATTCRRQHLLAYF
GEQSSPCGNCDNCLNPPQTWDATEAARKALSCVWRTGQRYGAGHLIDVLRGELTEKVIER
GHQDITTFGIGSELDEKRWRTVFRQLVARELVAVDHERYNALRLTDAARPLLRGESEFHL
RLERERSRGRAKRRGSATMDIPDGIPTTLFDRLRAWRFATAKERNVPAYVVFQDATLREI
AIARPHTLAELAGISGVGDRKLEAYGEAILELVAAAG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatgttcgccgatcccagttccccgcagaccgctccgcccgccgcccggtcc
cccgcatccggcgccttcgtcgcccgccgcgacgaatcgctcgccgacgccgcgcaccgc
gtgctcgagcatgtcttcggctaccccgccttccgcggcgagcaacagcagatcgtcgag
caggtcgccggcggcggcgacgccctggtgctgatgccgaccggcggcggcaagtcgctg
tgctaccagatcccggcgctgctgcgccagggtaccgcgatcgtggtgtcgcccctgatc
gcgctgatgcaggaccaggtcagcgcgctggtcgaggccggcgtgcaggcggccttcctc
aactcaagcctggatgccgagcgcgcgcgcgcggtggagcgggcgctgtgggatggcgcg
ctcgacctgctctacgtcgcccccgagcgcctgatgacgccgcgcttcctcgaccagctc
gaccacctgcgcgacaccggccgcctggccctgttcgcgatcgacgaggcgcactgcgtg
tcgcagtggggccacgactttcgcccggagtacctgcagctctccatcctgcctgagcgc
tacccggccaccccgcgcatcgcgctcaccgccaccgccgaccgccagacgcgcgaggag
atcgccgaacgcctgaacctgcagcacgcgcgccgcttcgtctccagcttcgaccgcccc
aacatccgctacaccatcgtcgacaagaacgacgcgcgccgccagctgctcgacttcatc
cgcgaggaatgtcccggccaggccggcatcgtgtattgcctgtcgcggcgcaaggtcgag
gaaaccgccgcctggctgcaggagcaggggctcaacgccctgccctaccacgccggcatg
acccaggagatccgcgccgagcaccagacccgcttcctgcgcgaggacgggctgatcatg
gtggcgacgatcgccttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcgcac
ctggacctgccgcgctcgatcgagggctactaccaggagaccggccgcgccggccgcgac
ggcctgccggcgcaggcgtggatggcctggggcgcgcaggacgtggtgcagcagcggcgc
atgatcgacgaatcggaggcgaacgaggagttcaagcgcctggcgcgcaaccggctcgac
gtgctggtcggcctggtcgaggccaccacctgccgccgccagcacctgctcgcctatttc
ggggaacaatcgagcccctgcggcaactgcgacaactgcctcaacccgccgcagacctgg
gacgccaccgaggctgcgaggaaggcgctgagctgcgtctggcgcaccggccagcgctac
ggcgccggccacctcatcgacgtgctgcgcggcgagctcaccgagaaggtgatcgagcgc
ggccaccaggacatcaccaccttcggcatcggcagcgagctcgacgagaagcgctggcgc
acggtgttccgccagctcgtcgcgcgcgagctggtggcggtggaccacgagcgctacaac
gcgctgcgcctgaccgacgccgcccgcccgctgctgcgcggcgagtccgagttccacctg
cgcctggagcgcgaacgcagccgcggtcgcgccaagcgccgcggcagcgcgacgatggac
atccccgacggcatccccaccaccttgttcgaccgcctgcgcgcctggcgcttcgccacc
gccaaggagcgcaacgtgcccgcctacgtggtgttccaggacgccaccctgcgcgagatc
gccatcgcccgcccgcacacgctggccgaactggccggcatcagcggcgtcggcgaccgc
aagctggaggcctacggcgaggcgatcctcgaactcgtcgccgcggcgggttga
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