Thauera sp. GDN1: CKCBHOJB_00912
Help
Entry
CKCBHOJB_00912 CDS
T09925
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKCBHOJB_00912 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thag03021
]
CKCBHOJB_00912 (rpoC)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_00912 (rpoC)
Enzymes [BR:
thag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKCBHOJB_00912 (rpoC)
Transcription machinery [BR:
thag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKCBHOJB_00912 (rpoC)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKCBHOJB_00912 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
DUF1499
Motif
Other DBs
NCBI-ProteinID:
WEN41360
LinkDB
All DBs
Position
1007257..1011471
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLADLFKQTLPNEEEFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRGQLLTEDDYLAKVEEYGDEFDA
VMGAEGIGSLLRTLDINLEVEKLRGDLETTNSEAKIKKFSKRLKVLEAFQQSGIKPEWMV
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVESQEPVVWDILEEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATREGVNVPGEGMIFADVSEVKRAYE
SGQIALHARVTVRLKEADLGPNGERIEKIVRHNTTAGRAILSEILPAGLPFSVIDKPLKK
KEISKLINASFRRCGLRATVIFADKLMQFGYGLATRAGLSIAVKDMLVPNAKHELIRAAE
AEVKEIAQQYTSGLVTDGERYNKVVDIWGRCGDQVAKAMMEQLGSEEVVDRNGKTVRQES
FNAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTREGFNMKALIEGGEVVEPLRER
ILGRVCVEDVVSPENQETVIEAGSLLDEDAVELIESLGVDEVKVRTPLTCETRYGLCAKC
YGRDLGRGSMVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVEAKSAGSI
RFAGNMRYVANAKGEKIVIARSAELVVADDMGRERERHKLPYGATLLVDDGAAIKAGTQL
ASWDPHTRPIVTEYAGTVKFENVEEGVTVAKQIDEVTGLSTLVVIDAKRRSTGGSTKGVR
PQVKLFDENGEEVKIAGTEHAVAITFQVGSLITVKDGQQINVGDILARIPQESAKTRDIT
GGLPRVAELFEARAPKDAGMLAEYTGTVSFGKETKGKQRLVITEPDGTSHEFLIPKDKHL
MVHDGQVVNKGELIVDGPADPHDILRLQGISELARYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVITDPCDTKFIREEQVERSEVLDENDRIEAEGKLPAQYENVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRKAQEEGR
DLGAEHAWAPAEDVVETQQDIEAS
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctgctcgctgacctgttcaagcaaaccctgccgaacgaggaagagttcgac
gcgatcacgatcggcctcgcctcgccggacaagatccgctcctggtcctacggtgaggtc
aagaagcccgagaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgc
gccaagatcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctc
aagcatcgcggcgtgatctgcgagaagtgcggcgtcgaggtgaccctgtccaaggtgcgc
cgcgagcgcatgggccacatcgaactggcctcgccggttgcccacatctggttcctgaag
agcctgcccagccgtctcggcatggtgctcgacatgaccctgcgcgacatcgagcgcgtg
ctttacttcgaagccttcgtcgtcgtcgagccgggcatgaccccgctcaaccgcggtcag
ctgctgaccgaggacgactacctggccaaggtcgaggaatacggcgacgagttcgacgcg
gtgatgggtgccgagggcatcggttcgctgctgcgcaccctcgacatcaacctcgaggtc
gagaagctgcgtggcgacctcgagaccaccaactccgaagccaagatcaagaagttctcc
aagcgcctcaaggtgctcgaggccttccagcagtcgggcatcaagcccgagtggatggtg
ctcgaggtgctgccggtgctgccgcccgacctgcgcccgctggtgccgctggacggcggt
cgcttcgcgacctccgacctgaacgatctctatcgtcgcgtcatcaaccgcaacaaccgc
ctcaagcgcctgctcgagctcaaggcgcccgacatcatcgtgcgcaacgagaagcgcatg
ctgcaggaggccgtcgactcgctgctcgacaacggccgccgcggcaaggccatgaccggc
gccaacaagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcaccgtcggt
ccgcagctcaagctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaag
cccttcatcttcaacaagctcgagctgatgggtctggccacgaccatcaagcaggcgaag
aagatggtggagtcgcaggagccggtggtgtgggacatcctcgaggaggtgatccgcgag
catccggtgctgctgaaccgcgccccgaccctgcaccgcctcggcatccaggccttcgag
ccggtgctgatcgaaggcaaggcgatccagctccacccgctggtgtgcgtggcgttcaac
gccgacttcgacggcgaccagatggccgtccacgtgccgctatcgctggaggcgcagatg
gaagcccgcacgctgatgctggcctccaacaacgtgctgtcgcccgccaacggcgagccg
atcatcgtcccctcgcaggacatcgtgctcggcctgtactacgccacccgcgagggcgtg
aacgtacccggcgagggcatgatcttcgccgacgtgtcggaggtgaagcgcgcctacgaa
tccggccagatcgcgctccatgcgcgcgtcaccgtgcgcctgaaggaagccgacctcggc
cccaacggcgagcgcatcgagaagatcgtgcgccacaacaccaccgccggtcgcgccatc
ctgtccgagatcctgcccgccgggcttcccttcagcgtgatcgacaagccgctgaagaag
aaggagatctccaagctgatcaacgcgtccttccgccgctgcggcctgcgcgctacggtg
atcttcgccgacaagctgatgcagttcggctacggtctggccacccgcgccggcctgtcg
atcgcggtcaaggacatgctggtgccgaacgccaagcacgagctgatccgcgccgcggaa
gccgaggtcaaggagatcgcccagcagtacacctccggtctggtgaccgacggcgagcgc
tacaacaaggtggtcgacatctggggtcgctgtggcgaccaggtcgccaaggcgatgatg
gagcagctcggttccgaggaggtggtcgaccgcaacggcaagaccgtccgccaggagtcc
ttcaacgccatctacatgatggccgactccggcgcgcgcggttcggcagcccagatccgc
cagctcgccggcatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccg
atcaccaccaacttccgtgaaggcctgaacgttctgcagtacttcatctcgacgcacggc
gcccgtaagggtctggccgacaccgcgctgaagaccgcgaactccggttacctgacccgt
cgtctggtggacgtgacccaggatctggtggtcatcgaggacgattgcggcacgcgcgag
ggcttcaacatgaaggccctgatcgagggcggcgaggtcgtcgagccgctgcgcgagcgc
atcctcggtcgcgtctgcgtcgaggatgtcgtcagccccgagaaccaggaaacggtgatc
gaggcgggcagcctgctggacgaggacgcggtcgagctgatcgagagcctgggcgtggac
gaggtcaaggttcgcaccccgctgacctgcgagacccgttacggcctgtgcgcgaagtgc
tacggtcgcgatctcggccgcggttccatggtcaacgtcggcgaagcggtgggcgtgatc
gccgcgcagtcgatcggcgagccgggcacccagctgacgatgcgtaccttccacgtcggc
ggcgcggcgtcgcgagccgcggctgcgagcggtgtcgaggccaagtcggctggttcgatc
cgtttcgccggtaacatgcgctacgtcgccaacgccaagggcgagaagatcgtcatcgcg
cgttccgccgaactggtggtggccgacgacatgggccgcgagcgcgagcgccacaagctg
ccgtacggcgcgaccctgctggtggacgacggtgcggcgatcaaggccggcacccagctc
gcctcgtgggatccgcacacccgcccgatcgtgaccgaatacgccggtacggtgaagttc
gagaacgtcgaggaaggagtcaccgtcgccaagcagatcgacgaggtgaccggcctgtcg
accctggtcgtcatcgatgccaagcgtcgctccaccggcggcagcaccaagggcgtgcgc
ccgcaggtcaagctgttcgacgagaacggtgaggaggtgaagatcgcaggcaccgagcac
gcggtggcgatcaccttccaggtcggctcgctgatcacggtgaaggatggccagcagatc
aacgtcggcgacatcctggcgcgcatcccgcaggaatcggcgaagacgcgcgacatcacc
ggcggcctgccgcgcgtcgcggagctgttcgaggcgcgtgcgcccaaggatgccggcatg
ctcgccgagtacaccggcacggtgtccttcggcaaggagaccaagggcaagcagcgcctg
gtgatcaccgagcccgacggcacctcgcacgagttcctgatcccgaaggacaagcacctg
atggtccacgacggccaggtggtgaacaagggcgaactgatcgtcgacggcccggccgat
ccgcacgacatcctgcgcctgcagggcatcagcgagctcgcccgctacatcatcgacgag
gtgcaggacgtgtaccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatc
gtccgccagatgctgcgtcgcgtggtcatcaccgatccttgcgataccaagttcattcgc
gaggagcaggtggaacgctccgaagtgctggacgagaacgatcgcatcgaggcggagggc
aaactgccggcgcagtacgagaacgtgctgctgggcatcaccaaggcctcgctgtcgacc
gactccttcatctccgcggcctccttccaggagaccacccgcgtgctgaccgaggcggcg
atcatgggcaagcgcgacgagctgcgcggcctgaaggagaacgtcatcgtcggtcgcctg
atcccggccggtaccggtctggcctaccaccgcagccgcaaggcacaggaggagggccgc
gatctgggggcggagcatgcctgggcgcccgcggaagacgttgtcgaaacgcagcaggac
atcgaggccagttga
DBGET
integrated database retrieval system
