Thauera sp. GDN1: CKCBHOJB_01179
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Entry
CKCBHOJB_01179 CDS
T09925
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03030
DNA replication
thag03430
Mismatch repair
thag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKCBHOJB_01179 (dnaE)
03430 Mismatch repair
CKCBHOJB_01179 (dnaE)
03440 Homologous recombination
CKCBHOJB_01179 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thag03032
]
CKCBHOJB_01179 (dnaE)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_01179 (dnaE)
Enzymes [BR:
thag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKCBHOJB_01179 (dnaE)
DNA replication proteins [BR:
thag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKCBHOJB_01179 (dnaE)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKCBHOJB_01179 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WEN41626
LinkDB
All DBs
Position
1293943..1297467
Genome browser
AA seq
1174 aa
AA seq
DB search
MNSAAHTPAEPGFVPSAPRFVHLRLHSEYSITDGIVQLDQAIAAAADDGMPALGISDLAN
LFGMVKFYKGTRGKGVKPIVGVDAWIQNEVERDKPQRVLLICRNRAGYGQLCELLTRAYL
ENKHRGRAEMRREWFENGAASELLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDA
FYIEIQRAGHPGTETYIRHAVDIAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVL
ADKRRPRDFTEEQYLKSQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPE
GMTLDDFLVQEAKVGLERRLAQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLIV
ADFIRWGKKNGVPVGPGRGSGAGSLVAYSLDITDLDPLEYALLFERFLNPERVSMPDFDI
DFCQDNRYRVIEYVRERYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIP
IEGAKPVSLNKAYEMEPQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIAP
GKLTDFCPLYIADGEDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYIERMTGS
RPDLMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGP
LGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADM
LRRAMGKKKPEEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVV
TYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTVANGIAVLPPDVNASDYRFVPVD
RKTIRYGLGAVKGVGEPAVRAILAARQKGGDFRDLFDFCERVDRRMVNRRVIEALIRAGA
MDTLAGHAGLDRAQLMATVALAMEAAEQAAANAMQGGLFDLMPEAAGAAPAFAKIRPWTE
RERLKEEKLAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRDITMLAGVVMEQRTKVGN
RGKMAFVQIDDGTEPREVTVYSEVLDASRGKIVTDEVLVVEAKVSNDDFSGGLRIIADRL
LTLGEARSRFARALQLRINGEVAASGGAVSAAGRLQTLLEPFREGGCPIRVSYRNASAEA
ELPLGDEWRVRLDDALLEGLREWLPPEAVEVLYP
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaattccgcagcccataccccggccgaaccgggtttcgtgccgagcgctccgcgcttc
gtgcacctccgtctccattccgaatactcgatcaccgacggcatcgtccagctcgaccag
gcgatcgccgcggcggccgacgacggcatgccggcgctcggcatctccgacctcgccaac
ctgttcggcatggtcaagttctacaagggcacgcgcggcaagggcgtcaagcccatcgtc
ggcgtcgatgcctggatccagaacgaggtcgagcgcgacaagccgcagcgggtgctgctg
atctgccgaaaccgcgccggctacggccagctgtgcgaactgctgacccgcgcctacctc
gagaacaagcaccgcggccgcgccgagatgcgccgcgagtggttcgagaacggcgccgcg
agcgagctgctgtgcctgtcgggggcgatgagcggcgacatcggcgcggcgatcgcggcc
ggtaacctcgccctcgccgagcagctcgccgccgactgggcgcggctgtttccggacgcc
ttctacatcgagatccagcgtgccggccatcccggcaccgagacctacatccgccacgcg
gtggacatcgccggccgcctcggcctgccggtggtggcgacgcatccggtgcagttcctc
aagcgcgaggacttcaaggcccacgaggcgcgggtgtgcatcgcccagggctacgtgctc
gccgacaagcgccggccgcgcgacttcaccgaggagcagtacctcaagagccaggcggag
atgtgcgaactgttcgccgatctgcccgaggcgctcgagaacgcggtcgagatcgcgcgc
cgctgctcgctgacggtgcagctgggcaagaacttcctgccgctgttcccgacccccgaa
ggcatgacgctggacgacttcctggtgcaggaggccaaggtcggcctcgagcgccgtctc
gcccagctctatccgcaccccgaggagcgcgagaagcagcgcccgcgctacgaggagcgg
ctgaagttcgagaccgacaccatcatccagatgggcttcccgggctacttcctgatcgtg
gccgacttcatccgctggggaaagaagaacggcgtgccggtgggcccgggccgcggctcg
ggtgccggctcgctggtggcttattcgctcgatatcaccgacctcgacccgctggaatac
gcgctgctgttcgagcgcttcctgaacccggagcgggtgtcgatgcccgacttcgacatc
gacttctgccaggacaaccgctaccgcgtcatcgagtacgtgcgcgagcgctacggcaag
gacgcggtgagccagatcgccaccttcggcaccatggcctcgaaggcggtggtgcgcgac
gtcggccgcgtgctcgacctgccctacggcctgtgcgaccggctgtccaagctgatcccg
atcgagggcgccaagccggtctcgctgaacaaggcctacgagatggagccgcagatcggc
gagatgatggccgacggcaacgacggcgaatcggtgcgcgacctgtggagcctggcgcag
cccctggagggcctctcccgcaacgtcggcatgcacgctggtggcgtgctgatcgcgccc
ggcaagctcaccgacttctgtccgctctacatcgccgacggcgaggatgccacgccggtg
tcgcagttcgacaaggacgacgtcgaggccgtcggcctggtgaagttcgacttcctcggc
ctgcgcaacctcaccatcatcgagctcgcgctggaatacatcgagcgcatgaccggcagc
cggcccgacctgatgagcctgggcttcgaggaccccgccgcctaccagatcctgaaggac
gccaacaccacggcgatcttccaggtcgaatcggacggcatgaagaagctgctgaagaag
ctcgcccccgaccgcttcgaggacatcatcgcggtgcttgcgctctaccggcccggcccg
ctcggctcgggcatggtggacgacttcatcctgcgcaagaagggccagcaggagatcgac
tacttccaccccgacctgaaagcctgtctggagccgacctacggcgtcatcgtgtatcag
gaacaggtgatgcagatcagccagatcatcggcggctacaccctgggcggcgccgacatg
ctgcgccgtgcgatgggcaagaagaagcccgaggagatggccaagcaccgcgccaccatc
gccgagggcgcgaagcagaagggctacgacccggcgctggccgagcagctcttcgacctg
atgaccaagttcgcggagtacggcttcaacaagtcgcacaccgcggcctacgcggtggtc
acctaccacaccgcctggctcaaggcgcaccactgcgcggccttcatggcggcgacgatg
tcgtcagacctggacaacaccgacaccgtcaagatcttctacgaggacacggtcgccaac
gggatcgcggtgctgccgcccgacgtgaacgcctccgactaccgcttcgtgccggtggat
cgcaagaccatccgctacggcctgggggcggtgaagggcgtgggcgagcccgcggtgcgc
gcgatcctggccgcgcggcagaagggcggcgacttccgcgacctgttcgatttctgcgag
cgcgtcgatcggcgcatggtgaatcgccgcgtgatcgaggcgctgatccgcgctggcgcc
atggacaccttggccggccacgccggcctcgaccgcgcgcagctgatggcgaccgtggcg
ctggcgatggaggcggccgagcaggcggcggccaatgcgatgcagggcggcctcttcgac
ctgatgccggaagctgcgggcgcggcgcccgcattcgcgaagatccgcccgtggaccgag
cgcgagcgcctcaaggaggaaaagctcgcgatcggcttcttcctctccggccatcccttc
aacgcgttcaagcccgaggtgcgccgcttcgtgcgccgcacgctggcccagctcgagccc
tcgcgcgacatcacgatgttggccggcgtggtgatggagcagcgcaccaaggtcggcaac
cgcggcaagatggctttcgtgcagatcgacgacggcaccgagccgcgggaagtcacggtg
tattccgaggtgctcgacgccagccgcggcaagatcgtcaccgacgaggtgctggtggtc
gaggccaaggtcagcaacgacgacttctcgggcggcctgcgcatcatcgccgaccgcctg
ctgacgctgggcgaggcgcgcagccgtttcgcgcgcgccctgcaactgcgcatcaacggc
gaagtggcggccagcggcggcgcggtgagtgccgccggcaggctgcagacgctgctcgag
cccttccgtgaaggtggctgcccgatccgggtcagctaccgcaacgcgagcgccgaggcc
gaactgcccctgggcgacgaatggcgggtgcgactggacgacgccctgctcgagggcctg
cgcgagtggctgccgccggaggcggtcgaggtgctctacccctga
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