Thauera sp. GDN1: CKCBHOJB_01641
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Entry
CKCBHOJB_01641 CDS
T09925
Symbol
orn
Name
(GenBank) Oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
thag
Thauera sp. GDN1
Pathway
thag03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CKCBHOJB_01641 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thag03019
]
CKCBHOJB_01641 (orn)
03009 Ribosome biogenesis [BR:
thag03009
]
CKCBHOJB_01641 (orn)
Messenger RNA biogenesis [BR:
thag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKCBHOJB_01641 (orn)
Ribosome biogenesis [BR:
thag03009
]
Eukaryotic type
Pre-60S particles
RNases
CKCBHOJB_01641 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
HGTP_anticodon2
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
WEN42056
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All DBs
Position
1795418..1795966
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AA seq
182 aa
AA seq
DB search
MAQDPKTLIWLDMEMTGLEPDRDRIIEIAIVLTNEALETIAEAPVITVHQPDSVLDAMDE
WNRNTHGKSGLIERVKVSAVSEAEAEAQALAFLQQWVPARTSPMCGNSVCQDRRFLARWM
PALENWFHYRNLDVSTVKELARRWCPEIYEGVKKAGSHTALADIHESIAELRHYRDHFLR
LE
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggacccgaagacgctgatatggctggacatggagatgaccggcctcgaaccc
gaccgtgaccgcatcatcgagatcgcgatcgtgctgaccaacgaggcgctggaaaccatc
gccgaggcgccggtgatcaccgtgcatcagcccgacagcgtgctcgacgcgatggacgag
tggaaccgcaacacccacggcaagtccgggctgatcgagcgcgtgaaggtgtccgccgtg
tccgaggcggaggccgaggctcaggcgctggccttcctgcagcagtgggtgccggcgcgg
acctcgccgatgtgcggcaactcggtgtgccaggaccgccgcttcctcgcgcgctggatg
ccggcgctggagaattggttccactaccgcaacctcgacgtgtccaccgtcaaggaactc
gcccggcgctggtgtccggagatctacgagggcgtcaagaaggcgggcagccataccgcg
ctggccgacatccacgagtcgatcgccgaactacgccactaccgcgaccacttcctgcgc
ctcgagtaa
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