Thauera sp. GDN1: CKCBHOJB_01867
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Entry
CKCBHOJB_01867 CDS
T09925
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CKCBHOJB_01867 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thag03019
]
CKCBHOJB_01867 (rnc)
03009 Ribosome biogenesis [BR:
thag03009
]
CKCBHOJB_01867 (rnc)
03036 Chromosome and associated proteins [BR:
thag03036
]
CKCBHOJB_01867 (rnc)
Enzymes [BR:
thag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
CKCBHOJB_01867 (rnc)
Messenger RNA biogenesis [BR:
thag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKCBHOJB_01867 (rnc)
Ribosome biogenesis [BR:
thag03009
]
Eukaryotic type
90S particles
RNase
CKCBHOJB_01867 (rnc)
Prokaryotic type
rRNA processing factors
CKCBHOJB_01867 (rnc)
Chromosome and associated proteins [BR:
thag03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
CKCBHOJB_01867 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-ProteinID:
WEN42280
LinkDB
All DBs
Position
2044800..2045471
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AA seq
223 aa
AA seq
DB search
MTVDQLQTRIGHVFIDARLLQEALTHRSFGQPNNERFEFLGDSILNCVMSIALFERFGEL
REGELSRVRASLVRQDALHRIALGLELGDCLRLGEGELKSGGSRRPSILADALEAVFAAV
FLDAGFGAAKAVIDRLYVPLLAEVDPRKPSKDPKTALQEWLQGRRMPVPTYTMVQALGEA
HAQEFEVACDIPKLGVRTLGRGPSRRIAEQQSAELALAAVRKK
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcgaccagctccagacccggatcgggcacgtcttcatcgacgcgcgcctgctg
caggaggctttgacgcaccgcagcttcggccagccgaacaacgagcgcttcgagtttctc
ggcgactccatcctcaactgcgtgatgtcgatcgcgctcttcgagcgcttcggcgaactg
cgcgagggcgagctgtcgcgggtgcgcgcctcgctggtgcggcaggatgccctgcaccgc
atcgcgctcgggctcgagctcggcgactgcctgcggctgggcgagggcgagctgaaatcc
ggcggcagccggcgaccctcgatcctggccgatgcgctggaggcggtgttcgccgcggtc
ttcctcgatgccggcttcggcgccgcgaaggcggtcatcgaccgtctctacgtgccgctg
ctcgccgaggtcgatccacgcaagccgagcaaggatcccaagaccgccttgcaggagtgg
ctgcaggggcgcaggatgccggtgccgacctacaccatggtgcaggcgctgggcgaagcc
catgcgcaggaattcgaggtcgcctgcgacatccccaaactcggcgtgcgcacgctgggg
cgcggccccagccggcggatcgcggaacagcagtcggccgagctcgcgctcgccgcagtg
agaaagaaatga
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