Thauera sp. GDN1: CKCBHOJB_01944
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Entry
CKCBHOJB_01944 CDS
T09925
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
thag
Thauera sp. GDN1
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thag03016
]
CKCBHOJB_01944 (thpR)
Enzymes [BR:
thag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
CKCBHOJB_01944 (thpR)
Transfer RNA biogenesis [BR:
thag03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
CKCBHOJB_01944 (thpR)
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
WEN42352
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All DBs
Position
2124103..2124642
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AA seq
179 aa
AA seq
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MRAFFALWPDAATAAALHARGRALRAECGGRLMRRDTVHMTLAFLGDVATARLEVLEEVA
GAVRGERFALELDRVGGWHGHRVLWSGCETVPPPLQALAAELSARLRAAGFELDARAFNP
HVTLVRNALRSPGHAEAPPLRWPVASFVLVASERSADGAHYRVLGRWALADGRPETARD
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctttttcgcgctgtggcccgatgccgccaccgcggcggccctgcatgcgcgc
ggacgcgccctgcgggccgaatgcggcgggcggctgatgcggcgcgacacggttcacatg
accctcgccttcctgggcgatgtcgccacggcgcggctggaagtgctcgaagaggtcgcg
ggcgcggtacgcggtgagcgtttcgcactcgagcttgaccgggtgggtggctggcacggt
caccgtgtcctgtggtcgggctgcgagacggtcccgccgcccttgcaggcgctggccgcg
gagctttccgcgcgcctgcgcgcagccgggttcgagctcgacgcgcgtgcgttcaatccg
cacgtgaccctggtccgcaatgccttgcgttcgcccgggcacgccgaggcgccgccgctg
cgctggccggtggcgagcttcgtgctggtcgcatccgagcgttccgcggatggcgcgcac
tatcgggtgcttggacgctgggctctcgccgatggcaggccggaaacggcccgagattga
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