Thauera sp. GDN1: CKCBHOJB_01980
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Entry
CKCBHOJB_01980 CDS
T09925
Symbol
polC_2
Name
(GenBank) DNA polymerase III PolC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03030
DNA replication
thag03430
Mismatch repair
thag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKCBHOJB_01980 (polC_2)
03430 Mismatch repair
CKCBHOJB_01980 (polC_2)
03440 Homologous recombination
CKCBHOJB_01980 (polC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thag03032
]
CKCBHOJB_01980 (polC_2)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_01980 (polC_2)
Enzymes [BR:
thag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKCBHOJB_01980 (polC_2)
DNA replication proteins [BR:
thag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKCBHOJB_01980 (polC_2)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKCBHOJB_01980 (polC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
WEN42388
LinkDB
All DBs
Position
2161858..2162454
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AA seq
198 aa
AA seq
DB search
MGRLRDGMGSVWNMEVVAVIDFETTGLSPAQGDRATEIAAVIVEGGRVVDRYQSLMNAGV
RVPAYIEALTGISNAMIRSAPPAGEVMREVSDFIGDIPIVAHNAAFDAKFWDAELARIQR
SRTQDFVCSLLLSRRLFPLAPSHRLGALVEYARLPVAGRYHRALADAEMAASLLVRLEEE
LRLHHQVHEVSVDLLRRI
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgcgtgacgggatggggagtgtgtggaacatggaagttgttgccgtcatc
gacttcgagaccacggggctctcgcccgcacagggtgatcgggcgaccgagatcgcggcg
gtgatcgtggaaggcgggcgggtggtggatcggtaccagagcctgatgaacgccggcgtg
cgcgtcccggcgtacatcgaggcattgaccggcatctccaacgccatgatccgcagcgca
ccgccggcgggcgaagtgatgcgcgaggtgtccgacttcatcggtgacatcccgatcgtc
gcccataacgcggcattcgacgcgaaattctgggatgccgagctcgcccgcatccagcgc
tcgcggacgcaggatttcgtttgctcgctgctgctgtcgcgacggcttttcccgcttgcg
cccagccacaggctcggcgcgctggtcgagtacgcacgcctgcccgtcgccgggcgttac
caccgcgcgctggccgacgccgagatggccgcgagcttgctggtgcgcctggaggaagaa
ctgcggctgcaccaccaggtgcacgaggtgtcggtcgacctgctgcggcggatctag
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