Thauera sp. GDN1: CKCBHOJB_02651
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Entry
CKCBHOJB_02651 CDS
T09925
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKCBHOJB_02651 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thag03019
]
CKCBHOJB_02651 (rhlE_2)
Enzymes [BR:
thag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKCBHOJB_02651 (rhlE_2)
Messenger RNA biogenesis [BR:
thag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKCBHOJB_02651 (rhlE_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WEN43049
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All DBs
Position
2898356..2899894
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AA seq
512 aa
AA seq
DB search
MSFADLGLIPELLKAVADAGYTEPTPIQRQAIPTVIAGHDVMGGAQTGTGKTAGFTLPLL
HRIARHANTSTSPARHQTRALILAPTRELAMQVYESVRTYSKHLPLRSVCVYGGVDIKPQ
QMELRRGIEVVIATPGRLLDHVEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP
KQRQSLLFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAH
LLRHKPDTQALVFVDTKLVCGRLAHFLERSGISADAIHGDKSQQQRTETLEAFKSGKLRV
LVATDVAARGIDIDELPFVINFELPHTAEDYVHRIGRTGRAGHSGNAISLVSSEEKHWLS
EIEKLIKFQIPQEIVPGFDPDPDFHEAGSRSHRGRRPSASADSLVPTRSTARERGGEGRS
EGRGEGSRESAREPGREVSRGAARDGSRGTARRPRSTIAADGFDFSKPYEPVTPPMAAIA
DTQPTAAAAAKPDPLRRGQRPIAVLLGGLGRK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgccgatctcggcctcattcccgaactgctgaaagccgtcgccgacgccggc
tacaccgaaccgacgccgatccagcgccaggccatccccaccgtcatcgccggccacgac
gtcatgggcggcgcccagacgggcaccggcaagaccgccggcttcaccctgccgctgctg
caccgcatcgcccgccacgccaacaccagcacctcccccgcccgccaccagacgcgcgcg
ctgatcctcgcgccgacgcgcgagctggcgatgcaggtgtacgagtcggtcaggacctac
agcaagcacctgccgctgcgctcggtgtgcgtctatggcggcgtggacatcaagccgcag
cagatggagctgcgccgcggcatcgaagtcgtcatcgccaccccgggccgcctgctcgac
cacgtcgagcagaagtcgatcaacctgtcccaggtcgaagtgctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccccgacatcaaacgcatcctcgccctgctgccc
aagcagcgccagagcctgctgttctcggccaccttctcggacgagatcaagaagctcgcc
gaccagatgctgaagaacccgcagctgatcgaggtcgcgcgccgcaacatggtctccgag
accatcacccacgtggtgcatccggtgtcctcgggcatgaagcgcaacctgctcgcccat
ctgctgcgccacaagcccgacacccaggccctggtcttcgtcgacaccaagctggtgtgc
ggccgcctggcccacttcctcgagcgcagcggcatctcggccgacgccatccacggcgac
aagagccagcagcaacgcaccgaaacgctcgaggccttcaagtcgggcaagctgcgcgtg
ctggtcgccaccgacgtcgccgcgcgcggcatcgacatcgacgagctgccgttcgtgatc
aacttcgagctgccgcacaccgccgaggactatgtgcaccgcatcggccgcaccggccgc
gccggccacagcggcaacgcgatctcgctggtgagctcggaagagaagcactggctgtcg
gagatcgagaagctgatcaagttccagatcccgcaggagatcgtgcccggcttcgatccc
gaccccgacttccacgaggcgggcagccgcagccaccgcggccgtcggccgagcgcgagc
gcggacagcctggtacccacgcgcagcacggcacgcgagcgtggcggcgaagggcgcagc
gaaggtcgtggcgaagggagtcgtgaatcggcccgggagcccgggcgtgaagtcagccgg
ggcgcagcgcgggacggcagccgcggcacggctcgtcgcccgcggtccacgatcgctgcc
gacggcttcgatttcagcaagccctacgagcccgtcaccccgcccatggccgccatcgcg
gacacgcagcccaccgccgccgcggccgccaaacccgacccgctgcgccgcgggcagcgc
ccgatcgccgtgctgctcggcggtctcggccggaagtaa
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