Thauera sp. GDN1: CKCBHOJB_02934
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Entry
CKCBHOJB_02934 CDS
T09925
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03420
Nucleotide excision repair
thag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKCBHOJB_02934 (uvrD)
03430 Mismatch repair
CKCBHOJB_02934 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_02934 (uvrD)
Enzymes [BR:
thag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKCBHOJB_02934 (uvrD)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKCBHOJB_02934 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CKCBHOJB_02934 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WEN43319
LinkDB
All DBs
Position
complement(3195636..3197852)
Genome browser
AA seq
738 aa
AA seq
DB search
MSTLLSNLNPEQLQAVTLPAQHALILAGAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTF
TNKAAKEMLARLGSMLPVSTRGMWIGTFHGLANRLLRAHHRDAGLPQLFQILDSGDQLAA
IKRLLKTLNVDDEKFPPRELQHFINGQKEAGNRPHAVEAWDDYTRQRVHLFQEYEAQCQR
ESVVDFAELLLRSYELLERNEPLRRHYQRRFRHILVDEFQDTNRLQYRWLKLFADEGREG
GAAMFCVGDDDQSIYRFRGAEVGNMRDFEREFRVHNVIRLEQNYRSHSNILDAANAIIRH
NSNRLGKNLWTDQGAGEPIRVFEAYSDGDEARWIVEEIQSLVRDGALRSEIALLYRSNAQ
SRVLEHQLFSAGIPYRVYGGLRFFERQEIKHALAYLRLIANADDDTSFARVVNFPTRGIG
ARSLEVLTDAARVYNTSLYATVPHLTGKPGTSLAQFVRLIEDLRRDTAGLPLPELVDHVL
DLSGLRAHYKADKEGRERLENLDELINAAANFLAESQADADVLAQPHALLADFLAHASLE
AGDHQADQGADAVQLMTVHSAKGLEFNVVFVSGLEEGLFPHENSILETDGLEEERRLMYV
AVTRARERLYLSFAQSRMLHGQTRYNLRSRFLEEIPAELTKWLTPPNPRSAAGGAMGGMG
GGYFKPSPATVQVQRAPRPTFATLPNGLRIGQAVSHAKFGQGVIVAAEGSGSDAKVQINF
GPAGVKWLLLAVAKLDPA
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgctgctcagcaacctgaatcccgaacaactgcaggcggtcacgctgcctgcg
caacacgccctgatcctcgccggcgccggctccggcaagacccgcgtgctcaccacccgc
atcgcctggctgatccagtcgggccaggtcgaccccgccggcatccttgccgtgaccttc
accaacaaggcggcgaaggagatgctcgcccgtctcggctcgatgctgccggtcagcacc
cgcggcatgtggatcggcaccttccacggcctcgccaaccgcctgttgcgcgcccaccat
cgcgatgccggcctgccgcaactgttccagatcctcgattcgggcgaccagctcgccgct
atcaagcgcctgctcaagaccttgaacgtcgacgacgagaaattcccgccgcgcgagctg
cagcacttcatcaacggccagaaggaagccggcaaccgcccgcacgcggtcgaggcctgg
gacgactacactcgccagcgcgtacacctgtttcaggagtatgaagcacagtgccagcgc
gagtctgttgtggattttgcggagttgctgctgcgcagctacgagctgctggagcgcaac
gaaccgctgcgccgccactaccagcgccgcttccgccacatcctggtcgacgaattccag
gacaccaaccgcctgcagtaccgctggctcaagctgttcgccgacgagggccgcgagggc
ggcgcggcgatgttctgcgtcggcgacgacgaccagagcatctaccgcttccgcggcgcc
gaggtcggtaacatgcgcgacttcgaacgcgagttccgggtgcacaacgtcatccggctc
gagcagaactaccgctcgcacagcaacatcctcgatgctgcgaacgcgatcatccgccac
aacagcaaccgcctcggcaagaacctgtggaccgaccagggcgcgggcgagccgatccgt
gtgttcgaggcctactcggacggcgacgaggcgcgctggatcgtcgaggagatccagtcg
ctggtgcgcgacggcgcgctgaggagcgagatcgcgctgctctaccgctccaacgcgcag
tcgcgggtgctggagcaccagctgttctcggccggcattccctaccgcgtgtacggcggc
ctgcgcttcttcgagcgccaggagatcaagcatgcgctcgcctacctgcggctgatcgcc
aacgcggacgacgacacctccttcgcgcgcgtcgtgaacttccccacccgcggcatcggt
gcgcgctcgctggaggtgctgaccgatgccgcgcgcgtctacaacaccagcctgtacgcc
accgtgccgcacctgaccggcaagccgggcacctcgctggcccagttcgtgcgtctgatc
gaggacctacgccgcgataccgccggcctgccgctgcccgagctggtcgaccacgtgctc
gacctcagcggcctgcgtgcgcactacaaggccgacaaggaaggccgcgagcgcctggag
aacctggacgagctgatcaacgccgccgccaacttcctcgccgagtcgcaggccgatgcc
gacgtgctggcgcagccccatgcgctgctggccgacttcctcgcccacgcctcgctcgaa
gccggcgaccatcaggccgaccagggcgcggacgcggtccagctgatgacggtgcactcg
gccaagggcctggaattcaacgtcgtgttcgtgtcggggctggaggaggggctgttccca
cacgagaacagcatcctcgagaccgacggcctggaggaggagcgtcgcctgatgtacgtc
gcggtgacgcgggcgcgcgaacgcctgtacctgtccttcgcgcagagccgcatgctgcac
gggcagacgcgctacaacctgcgctcgcgcttcctggaggagatccccgccgagctcacc
aagtggctgacgccgcccaatccgcgctcggctgcaggcggggcgatgggcggcatgggg
ggcggctacttcaagccttcgccggcgacggtccaggtgcagcgcgcgccgcggccgacg
ttcgcgaccctgcccaacggcctgcgcatcggccaggcggtcagccatgcgaagttcggc
cagggcgtgatcgtcgccgccgagggcagcggcagcgatgccaaggtgcagatcaacttc
ggccccgccggggtaaagtggctgctgctggcggtggccaagctggatccggcctga
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