Thauera sp. GDN1: CKCBHOJB_02950
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Entry
CKCBHOJB_02950 CDS
T09925
Symbol
rpoD_2
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
thag
Thauera sp. GDN1
Pathway
thag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CKCBHOJB_02950 (rpoD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thag03021
]
CKCBHOJB_02950 (rpoD_2)
Transcription machinery [BR:
thag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKCBHOJB_02950 (rpoD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF1376
SPO22
CRISPR_Cse2
Vfa1
BSP_II
Halogen_Hydrol
Motif
Other DBs
NCBI-ProteinID:
WEN43335
LinkDB
All DBs
Position
3212605..3214605
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AA seq
666 aa
AA seq
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MAREKAKDPRKDAPAKGRPSKAKDKAAPVVESPAATPLDAEVRRTRLKTLITLGKERGYL
TYAEISDHLPDDVADAEQIEGIIATFNNMGIQVYDEAPAAEDLLMSDSVATNVDEDVAEE
EAEQALSSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACP
TTIAEMLGIVDRIAADEAKIDELVDGLIDLNATSAEEAAEDEDAADADADADEEADTDEE
SEEDDEEDSAESAERANAASLLQLKNDALARFDVIRELYKKKMEALEKRGSQDLSYLALQ
QQISDELLNIRFTAKAIEKLCDSVRHMVEQVRSHERQILQLCVDRAGMPRQHFIKVFPGQ
EVNLDWLKDEIAAGKNYADGLMRVHPAVLEEQQKLIDLQDRIGIPLKELKDINRQMSTGE
AKMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
YATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAEKMEM
PEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDTATLAPAEAAMYSGLRDATCEVLD
SLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRS
FLDSDA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcgaaaaagccaaggacccgcgcaaggacgcccccgcgaagggccgcccttcg
aaggccaaggacaaggcagccccggtcgtcgaaagccccgctgcaacgccgctcgacgca
gaagtgcggcgcacccggctgaagaccctgatcacgctcggcaaggagcgtggttacctg
acctatgccgaaatcagcgaccacctgccggacgatgtcgccgacgccgagcagatcgaa
ggcatcatcgccaccttcaacaacatgggcatccaggtctatgacgaggcgccggccgcc
gaagacctgctgatgtccgacagcgtcgcgaccaacgtcgacgaggacgtcgccgaggaa
gaagccgaacaggccctgtcctcggtcgactccgagttcggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggcacggtggagctgctcacccgcgagggcgagatcgag
atcgccaagcgcatcgaggacggcctcaagcacatggtgcaggccatctccgcctgcccg
accacgatcgccgagatgctcggcatcgtcgaccgcatcgccgccgacgaagccaagatc
gacgaactggtcgacggcctgatcgacctcaacgcaacgagcgccgaggaagctgccgag
gacgaggacgccgccgacgcggacgccgacgccgacgaggaagcggacaccgacgaggaa
tccgaggaggacgacgaggaggacagcgccgagagcgccgagcgcgcgaacgccgcctcg
ctgctgcaactcaagaacgacgcgcttgcccgcttcgacgtgatccgcgagctgtacaag
aagaagatggaggcgctcgagaagcgcgggtcgcaggacctgtcctatctcgctctgcag
cagcagatctcggatgagctgctcaacatccgcttcaccgccaaggcgatcgagaagctg
tgcgactcggtacgccacatggtcgagcaggttcgcagccacgagcgccagatcctgcaa
ctgtgcgtcgatcgcgccggcatgccgcgccagcatttcatcaaggtcttccccggccag
gaagtgaatctcgactggctcaaggacgagatcgccgccggcaagaactacgccgacggc
ctgatgcgcgtgcaccccgcggtgctcgaagagcagcagaagctgatcgacctgcaggac
aggatcggcatcccgctcaaggagctcaaggacatcaaccgccagatgtccaccggcgaa
gccaagatgcgccgtgccaagcgcgagatgaccgaggccaacctgcgcctggtgatctcg
atcgccaagaagtacaccaaccgcggcctgcagttcctcgaccttatccaggagggcaac
atcggcctgatgaaggcagtggacaagttcgaataccgccgcggctacaagttctcgacc
tacgccacgtggtggatccgccaggccatcacgcgctcgatcgccgaccaggcgcgcacc
atccgcatcccggtgcacatgatcgagacgatcaacaagatgaaccgcatcagccggcag
atcctgcaggaaaccggccaggagccggatccggcgacgctggccgagaagatggagatg
cccgaggagaagatccgcaagatcatgaagatctccaaggagccgatctccatggagacg
ccgatcggcgacgatgacgactcccacctgggcgacttcatcgaggacaccgccaccctg
gccccggccgaggcggcgatgtactccggcctgcgcgatgcgacctgcgaggtgctcgac
tcgctgacgcagcgcgaagccaaggtgctgcgcatgcgcttcggcatcgagatgaacacc
gaccacacgctggaagaggtcggcaagcagttcgacgtcacccgcgagcgcatccgccag
atcgaggccaaggccctgcgcaagctgcgccacccgagccgttccgagaagctgcgcagc
ttcctcgacagcgacgcgtaa
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