Thauera sp. GDN1: CKCBHOJB_03237
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Entry
CKCBHOJB_03237 CDS
T09925
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
thag
Thauera sp. GDN1
Pathway
thag02020
Two-component system
thag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CKCBHOJB_03237 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CKCBHOJB_03237 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thag03021
]
CKCBHOJB_03237 (rpoN)
Transcription machinery [BR:
thag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKCBHOJB_03237 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
HTH_Crp_2
HTH_5
MarR
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
WEN43610
LinkDB
All DBs
Position
3525158..3526615
Genome browser
AA seq
485 aa
AA seq
DB search
MKPSLQLKLSQHLTLTPQLQQSIKLLQLSTIELNQEIERILVDNPMLEREDGDGSDFAPA
PPAGSPPEREQAQEAAAEPPAGEGERREGGEGSSEDEGIDWSNVGTGASSRSEGDDDDVD
YQDLQASGISLREHLDQQVALSQLSDRDRALVRFVIEALDDDGYLHQPLEELLQLLPPES
EVDLDELTIALHHVHNLEPIGVGARSPQECLALQLRALPPDPIRTLALEIVTRHLELLAD
RNFAKLKKLTGCDDDELRAAQALICSLDPHPGSRYSNAETRYVLPDVVVRKLRGRWTVSL
NQEAMPRLRINRLYASLLQQNRAQGGGLSGQLQEARWLIRNVQQRFDTILRVSQAIVDQQ
RQFFDHGDVAMRPLTLREIADQLELHESTVSRVTTQKYMATPRGVFELKYFFGSHVATDT
GGAASSTAIRALIRQLVDAEDSKKPLSDAKIAEILGQQGIVVARRTIAKYRESLNIPPVS
LRKSL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccagcctccagctcaagctctcccagcacctcacgctgacgccgcagctgcag
cagtcgatcaagctgctgcagttgtcgacgatcgagctgaaccaggagatcgagcgcatc
ctcgtcgacaacccgatgctcgagcgcgaggacggcgacggctcggacttcgcgcccgcg
ccgcccgcgggcagcccgcccgagcgcgagcaggcccaggaagccgcagccgaaccgccg
gccggcgagggcgagcgccgcgaaggcggcgaaggcagcagcgaggacgagggcatcgac
tggtccaatgtcggcaccggcgcctcgagccgcagcgagggcgacgacgacgacgtcgac
taccaggacctgcaggcttcgggcatctcgctgcgcgagcacctcgaccagcaggtcgcc
ctgtcccagctttccgatcgcgaccgcgcgctggtgcgcttcgtgatcgaggccctggac
gacgacggctacctgcaccagccgctcgaggagctgctgcagctgctgcccccggaatcc
gaggtcgacctcgacgagctgacgatcgcgctgcatcacgtgcacaacctcgagccgatc
ggcgtcggcgcccgcagcccgcaggaatgcctggccctgcagctgcgcgccctgccgccg
gacccgatccgcacgctcgccctcgagatcgtcacccgccacctcgagctgctcgccgat
cgcaacttcgccaagctcaagaaactcaccggctgcgacgacgacgagctgcgcgccgcc
caggccctgatctgcagcctcgacccgcatccgggctcgcgctactccaatgccgagacg
cgctacgtgctgcccgacgtcgtcgtgcgcaagctgcgcgggcggtggaccgtgagcctc
aaccaggaggcgatgccgcgcctgcgcatcaaccgcctctatgccagcctgctgcagcag
aaccgtgcccagggcggcggcctgagcggtcagctgcaggaagcgcgctggctgatccgc
aacgtgcagcagcgtttcgacaccatcctgcgcgtgtctcaggccatcgttgaccagcag
cggcagttcttcgatcatggggacgtggcgatgcggccactcaccctccgggagatcgca
gaccagctcgagctgcacgaatccaccgtatcgcgcgtcaccacgcagaagtacatggcg
accccgcgcggcgtattcgaactcaagtatttcttcggcagtcacgtcgccaccgatacc
ggtggagcggcatcctcgacggcgattcgcgcgctgattcgccagctggtggatgcggaa
gacagcaaaaagccgctgtccgacgccaagattgcagaaattctgggccagcagggtatc
gtggtcgcgcggcgaacgatcgccaaataccgcgaatccctcaatatcccgccggtcagt
ctgcgcaagtccctctga
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