Thauera sp. GDN1: CKCBHOJB_03423
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Entry
CKCBHOJB_03423 CDS
T09925
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
thag
Thauera sp. GDN1
Pathway
thag03030
DNA replication
thag03410
Base excision repair
thag03420
Nucleotide excision repair
thag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKCBHOJB_03423 (polA)
03410 Base excision repair
CKCBHOJB_03423 (polA)
03420 Nucleotide excision repair
CKCBHOJB_03423 (polA)
03440 Homologous recombination
CKCBHOJB_03423 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thag03032
]
CKCBHOJB_03423 (polA)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_03423 (polA)
Enzymes [BR:
thag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKCBHOJB_03423 (polA)
DNA replication proteins [BR:
thag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKCBHOJB_03423 (polA)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CKCBHOJB_03423 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKCBHOJB_03423 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WEN43793
LinkDB
All DBs
Position
complement(3711369..3714248)
Genome browser
AA seq
959 aa
AA seq
DB search
MPTLLLVDGSSYLYRAFHALPDLRNAQGEPTGAIRGVLSMLRRLESDYKAEFRACVFDAK
GKTFRDDWYPEYKSHRPPMPDDLRAQIAPLHEAVQAEGWPLLAVEGVEADDVIGTLTRQA
LERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVEAKFGVPPERIVDYLALVGD
TVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVGENLRRHLDFLPLGKKLVTV
ATDVELPVALDELPAREDDKAALRALYERFEFKSWLKDLDGGAESVAASKAATDSRRFAA
SAAPTAGRAGADGNRGQTPTSDASVGNRGQTPVSDASVGAAEAANSEARISDDPPGAHRK
GYVAILDWPTFDAWLARITAAELTAFDTETTSLDPMAAKLVGMSFSVEPGEAAYLPLVHR
AADAPAQLPLNEVLDKLGPWLESDQHAKLGQNLKYDAHVLANHGIRLGGIAHDTLLESYV
LESDKSHDMDSLARRHLGLATIPYTDVCGKGAKQIGFDEVDVARATEYAAEDADVTLRLH
RHLFPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLSQHSEELGRRLHALEGE
AHALAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDYPLPKLLLE
HRSLSKLKSTYADKLPRMVDPKTGRVHTSFSQATAVTGRLSSSEPNLQNIPIRTPEGRRI
RAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAFAKGEDVHRATAGEVFGVAPAEV
TSEQRRYAKVINFGLIYGMSAHGLAKNLGIERAAAQSWIDRYFARYPGVAAYMDRTRAEA
REQGFVETVFGRRLYLPDIRASQAGRRAGAERAAINAPMQGTAADLIKKAMIATDAWLAT
SGLKSKLVLQVHDELVLEVPKAELDTIRAELPRLMGGVAALKVPLLVEVGAGDNWDEAH
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccctgctgctcgtcgacggctccagctatctctatcgcgccttccatgcgctg
cccgaccttcgtaatgcgcagggcgagccgacgggcgcgatccggggggtgctgtcgatg
ctaaggcggctggaaagcgactacaaggcagaatttcgcgcctgcgtcttcgacgccaag
ggcaagaccttccgcgacgactggtatccggaatacaagtcgcaccgcccgcccatgccc
gacgacctgcgcgcgcagatcgcgccgctgcacgaggcggtgcaggccgagggctggccg
ctgctggcggtggagggcgtggaggccgacgacgtcatcggcacgctcacccgccaggcg
ctcgagcgcggctgggaagtggtgatctcgaccggcgacaaggacctcacccagctcgtg
cgtcccggggtgcgctgggtcaacaccatgagcgaggaggtgctggacgaggccggcgtg
gaggccaagttcggcgtgccgcccgagcgcatcgtcgattacctcgcgctcgtcggcgac
accgtggacaacgtgcccggggtggagaagtgcggacccaagaccgcggtgaagtggctc
accgaatacggcaccctcgacaatctggtcgccaatgccgacaaggtcggcggcaaggtc
ggcgagaacctgcgccggcacctggatttcctgccgctcggcaagaagctggtgacggtg
gcgaccgatgtcgagctgcctgtggcgctggacgagctgcccgcgcgcgaggacgacaag
gcggcgctgagggcgctgtacgagcgcttcgagttcaagtcgtggctgaaggatctggat
ggcggggcggagagcgtggcggcatcgaaggccgcgaccgattcgcgccgcttcgcggct
tccgccgctcccacagcggggcgggccggcgccgacggcaacaggggacagaccccaact
tccgatgcttctgtgggaaataggggacagaccccagtttccgatgcttctgtgggagcg
gcggaagccgcgaactcggaggcgcgtatctcagacgacccgcccggcgcgcaccgcaag
ggctatgtcgccatcctcgactggccgactttcgatgcctggctggcaaggatcaccgcc
gccgaactcaccgccttcgacaccgaaaccaccagcctcgacccgatggcggcgaagctg
gtcgggatgtccttctcggtcgagccgggcgaggccgcctacctgccgctcgtgcaccgc
gccgccgacgcgccagcacagctacctctgaacgaggtgctggacaagctcgggccctgg
ctggagtccgaccagcacgccaagctcggccagaacctcaagtacgacgcccacgtgctt
gccaaccacggcatccggcttggcggcatcgcccacgacaccctgctcgaatcctacgtg
ctcgaatccgacaagtcgcacgacatggattcgctcgccaggcgccacctcggcctcgcg
acgatcccctacaccgacgtgtgcggcaagggcgccaagcagatcggcttcgacgaggtg
gacgtcgcgcgcgccaccgagtacgccgccgaggacgccgacgtcaccctgcgcctgcat
cgccacctgttcccgcagctgcaggccctgccgcagctcgaggcgctctaccgcgagctc
gagatgccggtgctgggcgtgttgcagcgcatggagcgcaccggggtactgatcgacccc
ttcctgctcagccagcactccgaggaactcggccgccgcctgcacgcgctcgaaggcgaa
gcgcacgcgctcgccggccagcccttcaacctcggctcgcccaagcagctcggcgagatc
ctgttcggcaagctcggcctgccggtggtcaagaagaccgccaccggtcagccctcgacc
gacgaggaggtgctggagaagctcgccgaggactacccgctgcccaagctgctgctcgag
caccgcagcctgtccaagttgaagagcacctacgccgacaagctgccgcgcatggtcgac
ccgaagaccggccgcgtgcacaccagcttctcgcaggccaccgcggtcaccggccggctg
tcgagctccgagcccaacctgcagaacatcccgatccgcacgcccgaaggccgccgcatc
cgcgccgccttcatcgcgccgcgcgaccacctcatcgtctcggccgactactcgcagatc
gagctgcgcatcatggcccacctgtcggacgacgcccgcctgctcgaggctttcgcgaag
ggcgaggacgtgcaccgcgccaccgccggcgaggtcttcggggtggcgccggccgaggtc
accagcgagcagcgccgctacgccaaggtgatcaacttcggcctcatctacggcatgagc
gcgcacggcctggcgaagaacctcggcatcgagcgcgccgcggcgcagagctggatcgac
cgctacttcgcgcgctaccccggtgtcgccgcgtacatggaccgcacccgcgccgaggcg
cgcgagcagggcttcgtcgagaccgtgttcggccgccgcctgtacctgcccgacatccgc
gccagccaggccggccgccgcgccggcgccgagcgcgccgcgatcaacgcgccgatgcag
ggcacggcggcggatctgatcaagaaggcgatgatcgccaccgacgcctggctcgcgaca
tccggcctgaagtcgaagctcgtgctgcaggtgcacgacgaactggtgctggaggtgccc
aaggccgagctcgacaccatccgcgccgagctgcccaggctgatgggcggcgtggcggcg
ctgaaggtgccgctgctggtcgaagtcggcgccggcgacaactgggacgaggcgcactga
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