Thauera sp. GDN1: CKCBHOJB_03495
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Entry
CKCBHOJB_03495 CDS
T09925
Symbol
hupB_2
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
thag
Thauera sp. GDN1
Brite
KEGG Orthology (KO) [BR:
thag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thag03032
]
CKCBHOJB_03495 (hupB_2)
03036 Chromosome and associated proteins [BR:
thag03036
]
CKCBHOJB_03495 (hupB_2)
03400 DNA repair and recombination proteins [BR:
thag03400
]
CKCBHOJB_03495 (hupB_2)
DNA replication proteins [BR:
thag03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CKCBHOJB_03495 (hupB_2)
Chromosome and associated proteins [BR:
thag03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
CKCBHOJB_03495 (hupB_2)
DNA repair and recombination proteins [BR:
thag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
CKCBHOJB_03495 (hupB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
DUF2267
HU-CCDC81_bac_2
HU-DNA_bdg
HTH_Tnp_4
UBA_HYPK
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
WEN43864
LinkDB
All DBs
Position
complement(3775557..3775832)
Genome browser
AA seq
91 aa
AA seq
DB search
MNKGEFVEALADRLDVSRAQADRALSAVLDIIAEQLGKGEKVAFTGFGSFEVSERAARTG
RNPQTGATIEIAASSVPKFTAGATLKAAVNK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaggtgaattcgtcgaagccctggccgaccgtcttgatgtttcgcgcgctcag
gccgaccgcgcgctgtccgccgtgctcgacatcatcgccgagcagctgggcaagggcgag
aaggtcgccttcaccggcttcggctccttcgaggtttccgagcgtgctgcccgcaccggc
cgcaacccgcagaccggcgccaccatcgagatcgccgcgtcgagcgtgcccaagttcacc
gccggcgccacgctgaaggccgcggtcaacaagtaa
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