Thalassospira sp. A40-3: IT893_04490
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Entry
IT893_04490 CDS
T08364
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
thai
Thalassospira sp. A40-3
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thai03019
]
IT893_04490 (hrpB)
Enzymes [BR:
thai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IT893_04490 (hrpB)
Messenger RNA biogenesis [BR:
thai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IT893_04490 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Flavi_DEAD
HA2_C
AAA_30
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QPO12787
LinkDB
All DBs
Position
1005119..1007626
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AA seq
835 aa
AA seq
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MSSRFPALPIDAVLPEVISALENGTNAVLQAPPGAGKTTKVPLALLDCAWRGDQKIIMLE
PRRLAARASARRMAQLLGEAVGERVGYRVRFDSKVSKDTKIEVVTEGILVRMIQDDPELS
GVAAVLFDEFHERSLDADLGLALALETQGALRDDLRLVVMSATLDGDPIARLMGGCPVIT
SKGRAYPVETKYVAPKPDKWGNTRIDAEMTGAIKTALREESGSILAFLPGQGEITRVESA
LKDAVGSDVIIAPLYGAMDAKAQDIAIQPAPDGKRKVVLATAIAETSLTIDGIRMVIDSG
LQRLPRFDPASGMTRLVTVKSSQASAEQRRGRAGRLEPGVCYRLWPENEHRARAPFTAPE
IAEADLAPLTLELARWGVTDPETLPWLDVPDRAKIDQARDVLRGLEALDGENRITPMGTA
MAGLPVHPRLAHMMLRGAQLGLEEVACALAALLSDRDFLRGRGADLRIRVEAIIKGRAPK
MISEAAKQLARRLRDAAKQGGLAKPDTARVDRADEVGLLLAFAYPDRIGERRKGADARYR
LSGGRGGVLPNEDSLASEPYIAVAELDGQAREAKIYLAAPVARATLETHFADQISEGTEV
FWDAQSDAVAARWQRRIGALVLDEKATHDEADPDAITAAMIEGIRKLGLHCLPWDKASEG
LRARLAFLHRVEGDAWPDVSDDGLLASLEDWIAPYLSGITKRGQLKQIKLSEALLAGIDW
NQRQEMDRLAPTHWQVPTGSNIRIDYSGETPALPVRMQEMFGATETPKVANGKVAVTLHL
LSPAQRPIQVTSDLIGFWNGSYAQVKAEMKGRYPKHYWPDDPQVAEPTRRVKSRM
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgagttcccgatttcccgccctgccgattgatgctgtcctgccggaggtgatttccgcg
ctggaaaacggcaccaatgcggttttgcaggcgccaccgggtgctggcaagacgacaaag
gtgccgctggcgctgcttgattgcgcgtggcgcggggatcagaagatcatcatgctcgaa
ccccgtcgtctggccgcgcgtgccagtgcgcggcgcatggcgcagttactaggcgaggcg
gttggcgagcgtgtgggttatcgcgtccgctttgacagcaaggtttccaaggacacgaag
atcgaggtcgtgaccgagggcattctggttcgcatgattcaggatgacccggaactgtcc
ggtgttgccgccgtcctgtttgatgaatttcacgaacgctcattggatgccgatctgggt
ttggcccttgcccttgaaacgcagggggcgcttcgtgatgacctgcgccttgttgttatg
tcggccacccttgatggtgatccgattgcacgattgatgggcggttgcccggtgatcaca
tccaaaggtcgcgcctatccggttgaaacgaaatacgtggcccccaagcccgataaatgg
ggcaatacccgcattgacgccgaaatgaccggcgcgatcaaaaccgcccttcgcgaagaa
agcggatcgatcctggccttcctgccggggcagggcgaaatcacccgggttgaaagtgcg
cttaaggatgcggtgggaagtgatgtcatcatcgccccgctttatggcgcgatggatgcc
aaggcgcaggatatcgcgatccagcccgccccggatggcaagcgaaaggtcgttctggcc
accgcgattgccgaaacgtcgctgaccattgatggcatccggatggtgattgatagcggc
ctgcaacgcctgccaaggtttgatccggcatcggggatgacgcgtctggtcacggtcaaa
tcatcacaagccagtgccgagcaacgtcgtggccgcgccgggcgactggaaccgggcgtg
tgttatcgcctgtggccggaaaacgaacatcgtgcgcgcgccccctttaccgcgcccgaa
attgcagaggccgatttggcaccgctgacgctggagctggcgcgctggggtgttaccgat
cccgaaacgctgccgtggctcgatgtgcccgatcgtgccaagatcgatcaggcgcgcgat
gtcttgcgcggccttgaagcacttgatggcgaaaaccgcattacaccgatgggcactgcc
atggccggattgccggtccatccgcgcttggcgcatatgatgttgcgcggtgctcagctt
ggccttgaggaggtcgcctgtgcgctggcggcgttgttgtctgatcgcgatttcttgcgc
gggcgcggggcggatttgcgcattcgggtggaagcgatcatcaagggccgggcgccgaaa
atgatatcggaggccgccaaacaacttgcccgccgtttgcgcgatgccgcaaagcagggc
gggttggcaaaacccgataccgcgcgggtggatcgggccgatgaggttggcttgcttttg
gcctttgcctatcccgaccggatcggcgagcggcgcaagggggcggacgcgcgttatcgc
ctgtcgggcgggcgcggcggtgttttgcccaatgaagatagcttggcgtcggagccctat
atcgcggtggccgaactggacgggcaggcgcgcgaggccaagatttatctagccgcccct
gtggcgcgtgcaactcttgaaacccattttgccgatcagatttccgagggcacggaagtt
ttctgggacgcgcaaagcgatgcggttgccgcccgctggcaacgccggattggcgcactg
gtgttggatgaaaaagccacccatgacgaagccgatcccgatgcgattacagcggccatg
atcgagggcatccgcaaactcggcctgcattgcctgccatgggacaaggcatcagaaggc
ttgcgcgcaaggctggcgtttcttcatcgggtggagggcgatgcctggcctgatgtttct
gacgacgggcttctggcatcgcttgaagactggatcgcaccctatctgtcgggcatcacc
aaacgtggtcagcttaaacagatcaagctttctgaggcgttgcttgccgggatcgactgg
aaccagcgacaggaaatggatcgcttggcccccacccattggcaggtgccgaccggatca
aacatccgcattgattatagcggtgaaacacctgctttgccggtgcgcatgcaggaaatg
tttggtgccaccgaaacgccaaaggtcgcgaatggcaaggtcgcggtgacgcttcatctg
ctatcgcccgcacaacggcccattcaggtgacgagtgacctaatcgggttctggaacggg
tcctatgcccaggtgaaggccgagatgaaggggcgctatcccaaacattactggcccgac
gacccacaagtcgccgaaccaacacgtcgggttaagagccgcatgtga
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