Thalassospira sp. A40-3: IT893_06405
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Entry
IT893_06405 CDS
T08364
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thai
Thalassospira sp. A40-3
Pathway
thai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT893_06405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thai03019
]
IT893_06405
03009 Ribosome biogenesis [BR:
thai03009
]
IT893_06405
Enzymes [BR:
thai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IT893_06405
Messenger RNA biogenesis [BR:
thai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT893_06405
Ribosome biogenesis [BR:
thai03009
]
Prokaryotic type
rRNA processing factors
IT893_06405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPO13141
LinkDB
All DBs
Position
complement(1430847..1433849)
Genome browser
AA seq
1000 aa
AA seq
DB search
MVKRMLIDATHAEESRVVVIHGNRLEEYDVETSTKKQIKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHSDYYQIPVADREALAQQSNTQVKDAEIVEDNIGDTEDSPKKDKKP
SRSRSRRKPRAQSKDEASDAPEAENTDAAASAEAAAPSDAATDNAGSGEEEEAKPRRRRP
RNRRKKSDDVEASGTDAEASSDGNDDNGSDGDDTPTGGNAAMSAEIAELEVDVDDDANEV
TALDATADVEEDIEDMGGDDDGDEFVESHSRQLQKRYKIQEVIKRRQIILVQVVKEERGN
KGAALSTFLSLAGRYCVLMPNTPRGGGISRKITNAKDRKRLKSILAELEIPDGMAVIVRT
AGSERTKAEIKRDFDYLMRLWDRIRETTLQSQAPCLIYEEADLIKRSIRDLYARDVDEVL
VEGDDGYRVAKDFMKMLMPSHAKRVQPYKDQGVPLFHRFQVESQLDAMLNPVVQLKSGGY
LVINPTEALVAVDVNSGRSTRERNIEETAYKTNLEAAEELARQLRLRDLAGLIVVDFIDM
EDHRNQASVERKLKEAMRNDRARLQIGRISPFGLLEMSRQRLRPSLVESAFEVCTHCRGV
GLVRSIESAALHLLRVIEEEGMRRRSGALTVHVASEVALYILNRKRDSLGEIESRYGFSV
MIFGDDSLISPDHRIERTRAKKGDEVEEVSAVLNTDSVSLTAIENPVDLEEEEDEIERNE
DDDQGGKRRRRRRRRRGRNDDRDDRNNDQPQEASDDSDGASDNADGNNNDDDDDESNRKR
RRRGKRGGRRRSRRQDFDGNRTRSPADDPALTAARRNRDHEAPDGTDENTVIDADSEGQD
ADSFDQEGVRAGRTRSTTAPAPARPRRDRNDNRRNRRDRNSRSDRTDGDEDRGDVKNIPI
QSGPAPEAKPETQAEAKPEAASAPASAPAEVSAPAPKKETPKAEAPVENTAEKPAEKPVE
KPAEPKAAEPAKAEKAEPAPAPAKDEKPKPKKRGWWSLGR
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaacgtatgcttatcgatgcaacgcacgcggaagaaagccgcgtcgttgttatt
cacggaaatcgcctagaagaatacgacgtcgaaacttcgacaaaaaagcaaatcaagggt
aatatctatctcgcgaaagtcacgcgggtagaaccgtcgcttcaggcggcctttgttgac
tatggcggaaaccgtcatggtttccttgcgttcagcgaaatccattccgactattatcaa
attccggttgccgaccgtgaagctcttgcccagcagagcaacacacaggtcaaggacgcc
gaaatcgtcgaagacaatatcggcgataccgaagacagcccgaaaaaagacaagaaaccg
tcgcgttcccgctcgcgccgcaaaccgcgcgcccagagcaaggacgaagcatccgacgcg
ccagaggcagaaaacaccgacgcggccgcatcggccgaggccgctgccccgtcagatgcc
gcaaccgacaatgccggttcaggcgaggaagaagaagccaagccgcgtcgccgtcgcccg
cgcaatcgtcgcaagaaaagcgatgatgtcgaagcatctggcaccgacgcagaagcatcc
tctgacggcaacgatgacaacggctcggacggtgacgataccccgactggtggcaatgcc
gccatgtctgcggaaatcgccgagcttgaagttgatgtcgatgacgacgccaacgaagta
accgcacttgacgcgaccgccgatgttgaagaagacatcgaggatatgggtggtgatgac
gacggtgacgagttcgttgagtcacacagccgtcagcttcagaaacgctacaaaattcag
gaagtgatcaaacgccgccagatcattctggttcaggtcgtcaaggaagaacgcggcaac
aagggtgcggctctttcgaccttcctgtcgctggccggtcggtattgcgttctgatgcca
aacaccccgcgtggtggcggcatttcgcgcaagatcaccaatgccaaggatcgcaagcgc
ctgaaatccattctggccgagcttgagattccggacggcatggcggtgatcgttcgtacc
gctggttcagaacggaccaaagccgaaatcaaacgcgacttcgattatttgatgcgcctg
tgggatcgtatccgcgaaaccacccttcagagccaggcaccgtgcctgatttacgaagaa
gccgaccttatcaagcgttccatccgtgacctttatgcacgtgatgttgatgaagttctg
gttgaaggtgatgatggttaccgggttgccaaagacttcatgaagatgctgatgccgtcg
catgccaaacgcgtgcagccctacaaagatcagggcgtgccgctgttccaccgtttccag
gtggaaagccagcttgatgcgatgctcaacccggtcgtacagcttaaatccggtggttat
ctggttatcaacccgaccgaggcactggtcgcggttgacgttaactccggccgttcgacc
cgcgaacgcaacatcgaagaaaccgcttacaagaccaaccttgaagcggccgaagaactc
gcgcgccagctgcgcctgcgtgaccttgccggtctgatcgttgtcgactttatcgacatg
gaagaccaccgcaatcaggcatctgtcgaacgcaagcttaaggaagcaatgcgcaacgac
cgtgcacgtcttcagatcggccgtatcagcccgtttggtctgcttgaaatgtcgcgtcaa
cgcctgcgcccgtcgctggtcgaaagcgcgtttgaagtttgcacccactgccgtggtgtc
ggccttgtccgttcgattgaaagtgcagcccttcacctgctgcgcgtgatcgaggaagaa
ggcatgcgtcgccgttcgggcgcgctgaccgtccatgttgccagtgaagttgcgctttat
atcctgaaccgcaaacgtgactcgcttggcgagatcgaaagccgttacggtttcagcgtc
atgatctttggcgatgacagcctgatttcacctgatcaccgtatcgagcgtacacgcgcg
aaaaaaggtgacgaggtcgaagaggtttctgcggttctcaataccgacagtgtatcgctg
actgcgatcgaaaacccggttgatctcgaagaagaagaagacgaaatcgaacgcaacgaa
gacgacgatcagggcggcaagcgccgtcgtcgccgtcgtcgtcgccgtggccgtaatgat
gaccgcgatgatcgcaacaatgatcagccgcaggaagcatcagacgacagcgatggcgca
tctgataatgcagatggcaacaataatgacgacgatgatgacgaaagcaatcgcaagcgc
cgccgtcgtggcaagcgtggtggtcgccgtcgttcgcgtcgtcaggactttgatggcaac
cgcacccgttcaccggctgatgatccggccctgacggctgcacgccgcaatcgtgatcac
gaagcaccggacggcacggatgaaaacaccgtgatcgacgccgacagcgaaggtcaggat
gccgacagctttgatcaggaaggcgttcgcgccggtcgtacccgcagcaccactgccccg
gccccggcccgtccgcgccgtgatcgcaatgacaatcgccgcaatcgccgtgatcgcaac
agccgttctgatcgcactgacggtgatgaagatcggggtgatgtgaaaaacatcccgatc
cagtcgggcccggccccggaagcaaaacctgaaacccaggcggaagcaaaaccggaggcc
gcaagcgcaccggcatctgccccggcagaagtcagcgcaccggcaccgaagaaagaaacg
ccaaaggcagaagcccctgtcgaaaatacggcagaaaaacctgccgagaagcctgtagag
aaaccggccgagccgaaagccgctgagcctgccaaggctgagaaagctgaaccggcgcct
gcgccggcaaaagacgaaaaaccgaagccaaagaaacgcggctggtggagcctcggtcgt
taa
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