Thalassospira sp. A40-3: IT893_09615
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Entry
IT893_09615 CDS
T08364
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
thai
Thalassospira sp. A40-3
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thai03032
]
IT893_09615 (topA)
03400 DNA repair and recombination proteins [BR:
thai03400
]
IT893_09615 (topA)
Enzymes [BR:
thai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IT893_09615 (topA)
DNA replication proteins [BR:
thai03032
]
Prokaryotic type
DNA Topoisomerases
IT893_09615 (topA)
DNA repair and recombination proteins [BR:
thai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IT893_09615 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QPO13732
LinkDB
All DBs
Position
2115016..2117664
Genome browser
AA seq
882 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDTDNDFAMVWETDGRSEK
QIKEIASAARDSDTIYLATDPDREGEAISWHILEVLEQKKLLRGRDVHRVVFHEITKKAV
TEAIAHPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER
EIEIEAFKPDEYWSLEAGFAVPEGKFSARLTHLNGEKLDKLALGDESAAKIAKEKVESRS
YTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRLYEGVDIGGETVGLI
TYMRTDAVVLSQEALAAARRLIGKDYGDQYLPASARSFANKAKNAQEAHEAVRPTDLFRR
PEQVSRHLDKDQLALYTLIWKRTVACQMEDARFDQVAVDLSSNDNHVVLRANGSVVKFDG
FLKLYQEGKDDEAEDENDRRLPPLKEGQKPDLGKVSIDQHFTQPPPRYTEASLVKKMEEL
GIGRPSTYASIISVLQDRNYVLLERRRFVAQDRGRLVTAFLSKFFERYVQYNFTADLENQ
LDEVSMGKLEWKDVLKDFWKSFKGNVDEAKELKITDVLDALQVMLENYLFPPREDGTDAH
KCPKCTDGTLSLKLGKFGAFLGCSNYPECNYTRPLVANENGSESELDSGPKVLGIDKETG
KEITLRKGPYGVYVQLGEEEEVEGKNGKPKKVKPKRTSLPKGLEPSVVDLTKAEELLTLP
RVVGIYPDTGEEMKANIGRFGPYVQAGSIFASLKADDDVLTIGENRAITLIADKREKSGT
EIGKHPDDGEPIFVAVGRWGPFVKHKKTIANIRDVERDDITLEMAIKAIKEKEAKSGKTT
KAATKKTATKTATAKKKSPAKKKTAAKKPAAKKTTTKKAAAN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgtcatcgtcgaatccccggccaaagccaagacgatcaataaatatctcggt
gacgattataaggtactggcctcgtttggtcatatccgtgatctgccgtccaaggatggt
tcggtcgataccgacaatgattttgcaatggtctgggaaaccgatggccgttccgaaaag
cagatcaaggaaattgcttccgcggcacgtgactctgacaccatctacctcgcgactgac
ccggatcgcgaaggggaagccatttcctggcacattcttgaagttctcgagcagaaaaag
ctgctccgcggtcgcgatgttcatcgcgtcgtgtttcacgagatcaccaagaaagccgtc
accgaagccatcgcccatccgcgcgagcttaatcaggaactggtggatgcctatctggcg
cgccgtgcgcttgattatcttgtcggctttaacctgtcgccggttctgtggcgcaaactg
cccggttcgcgttcggctggccgcgtgcaatcggttgcgctccgcctgatttgcgaacgc
gagattgagatagaagcctttaagcccgatgaatactggtcgcttgaggctggctttgcc
gttccagagggcaagttttccgcacgtctgacccatctgaacggcgaaaagcttgataag
ctggcacttggtgatgaaagtgccgccaagatcgccaaggaaaaggtcgaaagccgcagc
tacaccgtttcaaaggttgagcgcaaagacgtcaaacggcgtccgcagccccccttcacc
acatcgacactgcaacaggaagcatcgcgtaagcttggctttggcgcgaaacgcaccatg
cagcttgcccagcgcctttatgaaggtgtcgatatcggtggcgaaacggttggtctgatc
acttatatgcgtaccgatgccgtggtgctttcacaggaagcactcgccgccgcacgccgc
ctgattggcaaggattatggcgatcaataccttccggccagcgcgcgcagctttgccaac
aaggccaagaacgcacaggaagcccacgaagctgtccgcccgaccgatctgttccgtcgt
cccgaacaggtttcgcgtcaccttgataaggaccagctagcactttacaccttgatctgg
aaacgtaccgtggcgtgtcagatggaagacgcccgtttcgatcaggtcgcagttgatctg
tcatcgaatgacaatcacgtggttctgcgtgccaatggttccgttgtgaagtttgacggc
ttcctgaagctttatcaggaaggcaaggatgacgaggccgaggacgaaaatgatcgtcgc
ctgccgccgctaaaagaaggccagaagcctgaccttggcaaagtcagcattgatcagcac
ttcacccagcccccgccccgctataccgaggcgagcctggtcaagaagatggaagaactc
ggcattggtcgtccgtcgacctatgcgtcgatcatttcggttcttcaggaccggaactat
gtgttgctggaacgtcgccgtttcgtcgcacaggaccgcggtcgcctcgtgaccgccttc
ctgtcgaaattctttgaacgctatgtgcagtacaacttcaccgccgatctggaaaaccag
cttgatgaagtttccatgggcaagctggaatggaaagacgttctcaaggatttctggaag
tcgttcaaaggcaatgtcgacgaggcgaaggaactcaagatcacggacgtccttgatgcc
cttcaggtgatgctggaaaactacctgttcccgccccgcgaagatggaacagacgcgcat
aaatgcccgaaatgcacggatggaacgctgagcctcaagctcggcaagtttggcgccttt
cttggttgttcgaactatccggaatgcaattatacccggccgctcgttgccaatgaaaac
ggctccgaatccgaacttgactccggccccaaagtccttggcattgataaggaaaccggc
aaggaaatcacccttcgcaaaggcccgtatggtgtttacgtgcagcttggcgaggaagag
gaagtcgaaggcaagaacggcaagccgaaaaaggtcaaaccgaaacgcacatccctgccc
aagggattggagccatctgtcgttgacctgaccaaggccgaagaacttctgaccctgcca
cgtgttgtcgggatttatcccgatactggcgaggaaatgaaggccaatatcggtcgtttc
ggcccatacgttcaggcgggtagcatttttgcctcgctcaaggccgacgatgatgttctg
acgattggtgaaaaccgggcgatcaccctgatcgcggataagcgtgagaagtccggcacg
gaaatcggcaagcatcccgatgatggtgaaccgatctttgtcgccgttggtcgctgggga
ccgtttgttaagcacaagaaaaccatcgccaatatccgcgatgtagaacgtgatgacatc
acccttgaaatggccatcaaggccatcaaggaaaaggaagccaagtcgggcaaaacgacc
aaggccgcgaccaagaaaacggcaaccaaaaccgcaacggctaagaaaaaatcccctgcg
aaaaagaaaacggctgcaaagaagcccgcagcgaagaagacaaccacgaaaaaggcggcg
gcgaattaa
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