Thalassospira sp. A40-3: IT893_09620
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Entry
IT893_09620 CDS
T08364
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thai
Thalassospira sp. A40-3
Pathway
thai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT893_09620 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thai03019
]
IT893_09620 (rnr)
03016 Transfer RNA biogenesis [BR:
thai03016
]
IT893_09620 (rnr)
Enzymes [BR:
thai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IT893_09620 (rnr)
Messenger RNA biogenesis [BR:
thai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT893_09620 (rnr)
Transfer RNA biogenesis [BR:
thai03016
]
Prokaryotic type
tRNA degradation factors
IT893_09620 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
QPO13733
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Position
2117713..2120133
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AA seq
806 aa
AA seq
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MANDTEDKKHFPTKEEIIEFIDMSPTPVGKREIARAFNIKGAAKIELKKILKDLKIGGDV
VKGRRRFDKPDRLPPVEVLEITGVDDDGEVLAKPNVWKHEYEPPLIVVKSIRRGGPSAPG
IGDKILAKLRYTGKHTYEASIMRVLGSGPQRVLGLYRPNEREGRVVPTDRKDSGEIAVPL
DDHPDLESGALVLTEILPGKHFGLRKGRITEVLGNINEPKSISLVSIHARGIPFEFPPEV
ELQARESKATPLGKRTDLRDIPLVTIDGADARDFDDAVWAEADPDPANEGGWHIMVAIAD
VSWYVRPGDALDREAVKRGNSCYFPDRVVPMLPFELSNGWCSLVPHEDRGCMAVEMWLDK
HGHKLRHKFCRGMMKSAARLTYDQVQRAMDGQPDDTTGPLVDTIIKPLYGAFNAFLEARK
KRGVLELDVPERKIELNDSGQIVAIAPRARFDSHKLIEEFMIAANVCAAEELERIKQPCM
YRIHDAPSEEKLEALHEFLEGAGYKLNKASVLKPRDFNRILELAKDTPESELINTVVLRS
QSQAMYSPDNIGHFGLALKRYAHFTSPIRRYADLLVHRALIAGLKLGEGGLTPEEGERFE
QIGEDISGTERRAAMAERDAVDRYVAAYMSDKVGAEFPGKISGVTHFGLFVSLNETGADG
LVPISTLPDDYYIHDAASHALVGQNRGKKFQLGDTVVVRIADADAATGSLALRLAEHADI
TARDLVERPRGRRGAGKRRGSPGDRSHRHGSKPGFRSGPRDANGPAGSSATKSKGKKAAA
KKKTTPKKQRKLVASNRVARKNTKTD
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaacgatacagaagacaaaaaacacttccccaccaaggaagagattatcgagttc
atcgatatgagcccgacaccggttgggaagcgcgaaattgcgcgcgccttcaacattaag
ggtgcagccaagatcgaactcaaaaagatcctgaaagacctgaagattggtggcgatgtc
gtcaagggccgccggcgttttgacaaacccgaccgcctgcccccggttgaagttctggaa
atcaccggcgttgatgacgacggcgaagttctggccaaaccgaatgtctggaaacatgaa
tacgaaccgccgctgattgttgtgaaatcaattcgtcgtggcggcccaagtgcgccaggc
attggtgacaagattctggccaagcttcgctataccggcaagcatacatacgaagccagc
atcatgcgggtccttggaagcgggccacagcgcgtcttggggctttatcgccccaatgaa
cgcgaaggccgcgttgtgcccacagatcgcaaggatagcggcgagatcgcggttccgctg
gatgatcatcctgatcttgaaagcggcgcactggttttgaccgaaattttgccgggcaaa
cattttgggctgcgcaaaggccggattaccgaggttcttggcaatatcaatgaaccgaaa
tccatcagccttgtatcgatccatgcgcgcggcattccatttgagttcccgcctgaagtc
gaacttcaggcacgcgagtccaaggcaacacctctgggcaaacgcactgatctgcgcgac
atcccgctggtcaccattgatggtgccgatgcgcgtgactttgacgatgccgtctgggcc
gaagccgaccccgatcccgccaatgaaggcggctggcacatcatggtcgcgatcgctgat
gtgtcctggtatgtgcgtccgggcgatgcacttgatcgcgaagcggtcaaacgcggcaat
agctgctatttcccggatcgtgtggtgccgatgttgccgtttgagctttcgaacggctgg
tgttcgcttgtcccgcatgaagatcgcggctgcatggcggttgaaatgtggctggataaa
cacggccataaactgcgtcacaaattctgccgcggaatgatgaagtcggccgcccgactg
acctatgatcaggttcagcgcgccatggacggccagccagacgacaccaccggtccactg
gttgataccatcatcaagccgctgtatggcgcgttcaatgcgtttttggaagcacgcaag
aaacgtggcgtgctcgagcttgatgtgcccgaacgcaagatcgagcttaatgacagcgga
cagatcgttgccattgcaccgcgtgcacggtttgacagtcacaagctgatcgaagaattc
atgatcgcagccaatgtctgtgctgctgaggaacttgaacgtatcaagcagccctgcatg
tatcgtatccacgatgcaccgagcgaggaaaagcttgaagcgctgcacgaattccttgaa
ggcgctggctacaagctgaacaaggcatcggtcctgaaaccgcgtgatttcaaccgcatt
cttgaactggccaaggacacgccagagtctgagctgatcaacacggtcgttctacgcagc
cagtcacaggccatgtacagccccgacaatatcgggcacttcggccttgcactgaaacgg
tatgcgcactttacctccccgatccggcgctatgccgaccttctggtccatcgtgctttg
atcgcgggcctcaagcttggtgaaggcggtttgacgcccgaagaaggcgaacggttcgaa
cagattggtgaggacatctcgggcaccgaacgacgggcggccatggccgaacgcgatgcg
gttgaccgttatgtcgctgcctatatgtctgacaaggtcggggcggaattccccggtaag
atttctggcgtcacccactttggtctgtttgtttcattgaacgaaacaggtgcagacggg
ctggttccgatatctaccctgcccgatgactattacatccatgacgcagcaagccacgca
cttgtcgggcaaaatcgcggcaagaagttccaactgggtgatacggttgtcgtcaggatc
gccgatgccgatgcggccaccggatcattggcattgcgacttgccgaacacgccgacatt
accgcccgcgatctggttgaacggccgcgcggacgtcgtggtgcgggcaaacggcgtggc
agccccggcgaccgcagccatcgccatggcagcaagcccggtttccgatccgggccgcgg
gatgcaaatggtccggctgggtcgtctgcgaccaagtccaaaggcaagaaagcagcggca
aagaaaaagaccacaccgaaaaagcagcgcaagctggtggcatccaatcgggtagcgcgt
aaaaacacaaaaaccgattaa
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