Thalassospira sp. A40-3: IT893_12170
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Entry
IT893_12170 CDS
T08364
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
thai
Thalassospira sp. A40-3
Pathway
thai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IT893_12170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thai03021
]
IT893_12170
03400 DNA repair and recombination proteins [BR:
thai03400
]
IT893_12170
Enzymes [BR:
thai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IT893_12170
Transcription machinery [BR:
thai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IT893_12170
DNA repair and recombination proteins [BR:
thai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IT893_12170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QPO10535
LinkDB
All DBs
Position
complement(2653291..2654307)
Genome browser
AA seq
338 aa
AA seq
DB search
MIQKNWQELIKPTKLDVTPGTDASRIGTIVAEPLERGFGQTLGNALRRILLSSLQGSAVT
AIQIDGVLHEFSSIPGVREDVTDIILNIKTMGVRMHAEGPKKMALKATGPGAVTAGQIET
GADIEILNPDLELCHLDDGATLNIEFTVDNGKGYVAASSHSSSDAPIGLIPIDAIFSPIR
KVAYKVENTRVGQDTDFDKLSLTVETNGALTPEDSVALAARILQDQLSLFVNFEEPEAVV
EEKKEDELPFNRNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKS
LNEIKDVLAQMGLHLGMEVGGWPPENIEELARKFEDPF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgattcaaaagaactggcaggaactgattaagccgacgaagcttgatgttactccgggt
actgatgccagccgtattggtacgatcgtggcagaaccgctggagcgcggttttggtcag
actctgggtaacgcgctgcgtcgcattctgctgtcgtcgctccagggttcggcagttact
gcgatccagatcgatggtgtattgcacgaattttcgtcgatcccgggtgtgcgtgaagat
gtcaccgacatcatcctgaacatcaagaccatgggcgtgcgcatgcatgctgaaggtccg
aagaaaatggctctgaaggcgactggccctggtgccgtcaccgcaggtcagatcgaaacc
ggtgcggatatcgaaatccttaacccggatctcgagctttgccatcttgacgatggtgct
acgctcaacatcgaattcaccgttgataacggtaaaggctatgttgcagccagctcgcac
agctcgtcggacgcgccgattggtcttattccgatcgatgcgatcttcagcccgatccgt
aaagtggcctacaaggtggaaaacacccgtgttggtcaggataccgactttgacaagctg
tcgctgaccgttgaaaccaacggtgcactgaccccggaagattcggttgcacttgctgcc
cgtatccttcaggaccagctgtcgctgttcgtcaacttcgaagagccggaagcggttgtc
gaagagaagaaagaagacgaactgccgttcaaccgtaaccttctgcgtaaggttgacgag
cttgagctgtcggtacgttcggctaactgcctgaagaacgacaacatcatctatatcggt
gatcttgttcagaagaccgaagcagaaatgctccgtacgccgaacttcggccgtaagtcg
ctgaacgaaatcaaggatgttctggctcagatgggtctgcatcttggtatggaagtcggc
ggttggccgccggaaaacatcgaagaacttgcgcgcaagttcgaagatccgttctaa
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