Thalassospira sp. A40-3: IT893_17780
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Entry
IT893_17780 CDS
T08364
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thai
Thalassospira sp. A40-3
Pathway
thai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT893_17780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thai03019
]
IT893_17780
Enzymes [BR:
thai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IT893_17780
Messenger RNA biogenesis [BR:
thai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IT893_17780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Flavi_DEAD
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QPO11533
LinkDB
All DBs
Position
complement(3849199..3851022)
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AA seq
607 aa
AA seq
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MTNFNGLNLIEPLLRNVEAAGFSAPTEIQAATIPALLEGKDLMGISHTGGGKTAAFCLPL
LQRLAENPQRPKPGQPRAVILAPTRELATQIGQCLRDFKKGIRLFSSVVFGGSPMGPQIQ
ELRRGVDILVATPGRLLDHMSRNTVRFDDVEVFILDEADRMLDMGFSEDVLTVAELLPNA
HQTVMFSATMPPEVKHLTDRLLKDPVKVETAPQSSVTERVTQVGMFVKRHDKTKLLVQLL
KRDESERVLVFTKTKADADELSFQLRDEGIDSDAIHGDKQQRIRQKILRNFRNGSFPVLI
ATDVAARGIDVPGITHVVNYDLPQDAESYVHRIGRTGRGSAEGIAISFCEPRDIRLLRNI
ERLIKQDVNIDEDHEFHAAPPPRSFGAGASAGGRGGRGGRDGGRGFGGGGRGGFGGRDGG
RDGGRGRGGFGGGRDGGRDGARGDNRDGGRGRGFGGPRDGARAEGDRAARGFGGRDEARD
GGRDGARRDFNDRPRRDGGDFRNDRKPRFDNDDRAPRGDREERSGGRGGNFRPRGEGRGE
GGNRDERRFADKPRGDRGGNFRGRDGGRDGAGARDGARRDFNDRPRRAEGGRSEGRGGNQ
GMKRRSA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacgaattttaatgggctcaacctgatcgagcccctgctgcgcaatgttgaagctgcc
ggtttctccgcgccgaccgaaattcaggccgcgacgattcctgcacttctcgaaggcaag
gacctgatgggtatttcccatacgggtggcggtaaaaccgctgcattctgcctgccgttg
ctgcagcgtcttgccgaaaacccgcagcgcccgaaaccgggtcagccgcgcgcggttatt
ctggcaccgacccgcgaactggcgacccagatcggccagtgcctgcgtgatttcaaaaaa
ggcatccgcctgttttcctctgttgtctttggtggctccccgatgggcccgcagattcag
gaactgcgccgtggcgttgatatcctggttgcgaccccgggtcgtctgctggatcatatg
tcgcgcaacacggttcgtttcgacgatgtcgaagtcttcatccttgatgaagccgaccgt
atgcttgacatgggcttctccgaagacgttctgaccgttgctgaactgcttccgaacgcg
catcagaccgtgatgttctcggcaaccatgccgccggaagtcaaacacctgaccgaccgt
ctgcttaaagacccggtcaaggttgaaaccgcaccgcagtccagcgtgaccgagcgtgtc
acccaggttggcatgttcgtgaaacgtcacgacaagaccaagcttctggttcagctgctt
aaacgtgacgaatccgaacgcgttctggtgtttaccaaaaccaaggcagatgccgacgaa
ctgtcgttccagctgcgcgatgaaggcatcgacagcgatgccatccatggcgacaaacag
cagcgcatccgtcagaaaatcctgcggaacttccgcaatggcagtttcccggttctgatt
gcgaccgatgttgctgcacgtggtatcgacgttccgggtattacccacgttgtgaactat
gacctgccgcaagatgccgaaagctatgtccaccgtatcggtcgtaccggtcgtggcagt
gccgaaggtattgcgatttcattctgtgaaccgcgcgacattcgcctgcttcgcaacatc
gaacgcctgatcaaacaggacgttaatatcgacgaagatcacgaattccatgctgccccg
ccgccccgttcgttcggtgccggtgcgagtgctggcggtcgtggtggtcgcggtggccgt
gacggtggtcgtggctttggcggcggcggtcgcggtggtttcggcggccgtgatggcggc
cgtgatggcggtcgtggccgtggtggcttcggcggtggtcgtgatggcggccgcgatggt
gcccgtggtgacaatcgtgacggtggtcgcggtcgtggtttcggcggcccgcgtgacggt
gcccgcgccgaaggtgatcgcgcagcccgcggtttcggtggtcgcgatgaggcacgcgat
ggtggccgtgatggcgcacgtcgtgacttcaatgatcgtccgcgtcgtgatggcggtgat
ttccgcaatgaccgcaagccgcgctttgacaacgatgaccgtgcaccgcgcggcgatcgt
gaagagcgcagtggcggccgcggtggcaacttccgtccccgtggtgaaggtcgtggcgaa
ggtggcaaccgtgatgaacgtcgctttgccgacaagccgcgtggtgatcgtggtggtaac
ttccgcggtcgcgatggtggccgtgatggtgccggtgcgcgcgacggtgcccgtcgtgac
ttcaacgaccgtccgcgtcgtgccgaaggtggtcgcagcgaaggccgcggtggcaaccag
ggcatgaaacgccgttcggcataa
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