Thalassospira sp. A40-3: IT893_18175
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Entry
IT893_18175 CDS
T08364
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
thai
Thalassospira sp. A40-3
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thai03400
]
IT893_18175 (addB)
Enzymes [BR:
thai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IT893_18175 (addB)
DNA repair and recombination proteins [BR:
thai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
IT893_18175 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
T3SS_ATPase_C
Motif
Other DBs
NCBI-ProteinID:
QPO11601
LinkDB
All DBs
Position
complement(3938924..3942085)
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AA seq
1053 aa
AA seq
DB search
MADLFDYMDAPEYDEASFAGEATPPSNLFFIPPGVAFADLIAKQLMAETADQPDTLPDYV
LMVPNRRSAKVMRDAFLRQSQGAVTLLPTIRPLGEADEDELAIYGAGGEQAALDLPPAIP
DLQRKLLLTQLIMGRPDHRGEKPTADQAARLAGELARFLDQVQTENCAFDDLKGLVPEEF
AEHWQLTLEFLQILTIHWPGILASQDVSDRAMRRNALIAAQIDLWEENPPETPVLIVGST
GPFPALRDLMAAVLRMPQGRVVLPGLMTGLSHEDWAAIADDAAHPQHLLGKTLGHIGRHA
DSVLPWPALDPENDATIERRRLAREALRPAKTTHHWRHITGFIPDVMDGVLRVDCSGARE
EATTIALMMREALEHPEKTCALVTPDRGLARRVATELRRWEVEIDDSAGIPLHDTAPAIY
LRLVVRAVQEEFAPVPLLELLKHPLSAAGLSPEKFRVLTRLLEKEVLRGARPGPGLDGLQ
TALDGWCEDTVARLSTSGANSAIGRIERIRDDHARLSDLVARIKTCLDPIDDLTSDKTHA
PVHLLRSHVTAAEALAASDTQTGADRLWRGEAGEALADFVHELLNALTDFAPMPGNRYSA
FLDALMADRAVRPRYGKHPRLFIWGTVEAQMQQADLTILGGLNEGVWPPEAGADPWMSRP
MRRNFGLPAPEHRVGQSAHDFQQLFCSPDVVMTRALRIEGTPTVPSRWLLRIENILRKSG
VSMEKPDAAEWRALADLIDEPASSMRIKIGRPAPKPPASARPDRLSVTQIETWMRDPYAI
YARHILGLRKLDGIDEDPGAADYGNLIHDALDQFIARHPEHLPPDGEHELLIIGREVFEP
LAARPGLWAFWWPRFERIAKWFIQTEAARRDAVRKSYTEQSGTLDTSSGFQVYARADRID
QLRDGGIAIIDYKTGAPPSQGDVANGFAPQLPLEAAIAEKGGFGDVPAGPPASMAFWKLS
GGDPAGEIVEINTGRMKTTPAELAHAAVEGVNGLAAAFADPATPYLSVPHPDHAPKYSDY
VHLARLREWMGSEDVDDSANIDEKQDVGEGDIS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctgtttgattacatggacgcgcccgaatatgacgaagcttccttcgcgggg
gaggcaacgccgccctcaaacctgtttttcattccgcccggcgttgcctttgccgatttg
atcgccaaacaactgatggcggaaaccgccgatcagccagatacattgcccgactatgtc
ctgatggtgcccaatcgccgatccgccaaggtgatgcgcgatgcctttttgcggcagtcg
caaggcgcggtgaccctgcttccgaccattcgtcccttgggcgaggcggatgaggatgaa
ttggcgatttatggtgcgggtggtgaacaggccgcccttgatctgccgcccgccatcccc
gatctgcagcgcaaattgctgttaacccagctgatcatgggccgccccgatcatcgcggt
gaaaaaccaactgccgatcaggccgcccgtcttgccggcgaactcgcacgctttctggat
caggtgcaaactgaaaactgcgcctttgacgatcttaagggcctggtccccgaagaattc
gccgaacactggcagctcacccttgaattcctgcaaatcctgaccattcactggccaggt
attttggcttctcaggatgtcagtgaccgtgccatgcggcgcaatgccctgattgccgca
cagattgatctatgggaagaaaacccgccagaaacgccggtgctgattgtcggctcaacc
ggcccgttccccgccttgcgcgatttgatggcggcggtgcttagaatgccgcagggccgt
gtggttttgcccggccttatgacagggcttagccacgaagactgggcggcgattgccgat
gatgccgcccatccacaacatcttctgggcaagactctcggccatatcggacgtcatgct
gacagtgttctgccttggcccgcccttgatcccgaaaacgatgccacgattgagcgccga
cgtctggcccgcgaagcgttacgaccggccaagaccacccatcactggcgtcacatcacc
ggatttatcccggatgtgatggatggcgttttgcgtgtggattgttcgggtgcgcgtgaa
gaggcaaccacgattgcccttatgatgcgcgaggcgctggagcatcccgaaaaaacctgc
gcgctggtcaccccggatcgcggccttgcccggcgtgtcgccaccgaactgcgtcggtgg
gaggtcgaaattgatgactcggccggtatcccgctgcatgacaccgcaccggcgatttat
ctgcgccttgtggtgcgtgccgtgcaggaggaatttgcgcctgtcccattgctggaactt
ctgaaacatccgctctcggcggcgggtctgtcaccggagaaattccgcgtcctgacccgc
cttctggaaaaggaagtcctgcgcggtgcgcgtccgggtccggggctggatgggttgcaa
acggctcttgatggctggtgcgaggatacggtcgcccgcctcagcacatccggggcaaac
agcgccattggccggattgaacgcatccgcgatgatcatgcgcgccttagtgatctggtc
gcccgcattaaaacctgccttgatccgattgatgatctgaccagcgataaaacgcacgcg
ccagttcatctgctgcgcagtcatgttacggcggctgaggcactggcggccagtgatacc
caaaccggcgcggatcgcctgtggcgcggcgaagcgggcgaggcattggcggatttcgtc
catgaattgctgaatgcgctgacggattttgcgccgatgccgggcaatcggtatagcgcg
tttcttgatgcccttatggcggatcgcgcggtgcgtccgcgctacggtaaacatccgcgc
ctgtttatctggggcacggtcgaagcccagatgcagcaggccgatctgaccatacttggc
gggcttaatgaaggtgtctggccgcccgaagccggtgccgatccgtggatgagccgcccg
atgcgccgtaatttcggcttgcccgcccccgaacaccgggtcgggcaatcggcccatgat
tttcagcaactgttttgttcgcccgacgtggtgatgacccgtgcgctgcgtatcgaaggc
acgccaaccgtgccgtcacgctggttgttacggattgaaaacattctacgcaaatcgggc
gtgtcgatggaaaagcccgatgcggccgagtggcgtgcgttggctgatcttattgatgaa
ccggcctcaagcatgcggatcaagatcggacgcccggcccccaaaccgcctgcatcggcg
aggccggatcgcctgtcggtgacccagatcgaaacgtggatgcgtgatccttacgctatc
tatgcccgtcatatccttggcctgcgcaagcttgacgggatcgacgaagatcccggtgcc
gcggattacggcaacctgattcacgacgcccttgatcagttcattgcccgccatcccgaa
catttgccaccggatggcgaacatgaattgctgatcattggtcgcgaagtgttcgaaccg
cttgcggcacgtcccggtctttgggccttctggtggccacggttcgagcgcatcgccaaa
tggttcatccagaccgaagcagcgcggcgcgatgcggtgcgcaaatcctataccgaacaa
tccggaacccttgataccagcagcggttttcaggtctatgcccgtgccgaccgcattgat
cagctgcgcgatggcgggattgcgatcattgattataaaaccggcgcaccacccagtcag
ggcgatgttgccaacggctttgccccgcaattaccccttgaagccgccatcgccgaaaag
ggcggttttggcgatgtgcccgcaggtcccccggccagcatggcattttggaagctttcg
ggcggggacccggcaggtgagatcgttgaaatcaacacaggccggatgaaaaccacgcca
gcggaacttgcccatgcggcggtggagggtgtgaatggtctggccgccgcctttgccgat
cctgcaacgccctatctcagtgtgccgcatcccgatcacgcgccgaaatattccgactat
gtccatcttgcccgcctgcgtgaatggatgggcagcgaggatgtggatgatagcgctaac
atcgatgaaaaacaggatgttggtgaaggggatatatcatga
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