Thalassospira sp. A40-3: IT893_18820
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Entry
IT893_18820 CDS
T08364
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
thai
Thalassospira sp. A40-3
Pathway
thai02020
Two-component system
thai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thai00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IT893_18820 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IT893_18820 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thai03021
]
IT893_18820 (rpoN)
Transcription machinery [BR:
thai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IT893_18820 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
Arg_repressor
LacI
HTH_38
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QPO11721
LinkDB
All DBs
Position
complement(4078317..4079906)
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AA seq
529 aa
AA seq
DB search
MALKARLDLRQSQSLVMTPQLQQAIKLLQFNNIELSNFIDSELMENPLLERADPGQTYAE
AGDGAVGNGDEGLDSRSNDNFTDRDDRFGTDRLTSSETMGSDDGPLDVSSDALYGGEGEI
TRNGEPVSGSHDYSAPYSGGAGGGAGGAGGSAAGGDDLPGLEQTLADEATLRQTLDDQLN
IAFADAMSRMIGSYLIDMLDENGYISGDLDEVSESLECDIADVERVLKVMQGFDPVGIFA
RDLAECLELQLRELNRFDPAMAALLANLDLLAKRDFDRLRRVCGVDSDDLHDMIAEIKTL
DPRPGKTADGEIATPVIPDVLMRAAGNGNWHLELNSEALPRVLVNEDYVAQIGSGLRDRE
ERGFMSEKLQSANWLVKALHQRATTIMKVASEIVRQQDGFFTHGVAHLRPLILRDIAEAI
GMHESTVSRVTNGKFMSTPRGMFELKYFFTTAISSSDGGDAYSSEAVRHRIKSLIDNEEP
KKILSDDKLVELLGKEGIDIARRTVAKYREAMRIPSSVQRRREKKSRAS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccctgaaggcgcgtctggatctacgccagtcccagtcacttgtcatgactccccag
ctgcagcaggcaatcaaactgctgcaattcaataatattgagctttccaatttcatcgac
agtgaactgatggaaaacccgctgttggagcgggccgatcccggccagacctatgccgag
gccggtgatggtgcggttggcaatggcgatgaaggccttgatagccgatcaaacgacaat
ttcactgaccgcgatgaccggttcggcaccgatcgcctgacgtccagcgaaacgatgggc
agtgatgacggcccgctggatgtttcaagtgacgcgctttatggcggtgaaggtgaaatc
acccgcaacggtgaaccggtttcaggcagtcacgattattccgcgccctatagcggcggt
gcgggtggcggtgctggcggtgctggcggttcggccgcgggtggggatgaccttccgggg
ctggaacagacgctggctgatgaagcgacattgcgccagacccttgatgatcagctcaat
atcgccttcgccgatgccatgtcgcgtatgatcggcagttacctgatcgatatgcttgat
gaaaacggctatatcagcggcgatcttgatgaagtttccgaatcccttgaatgcgatatc
gcggatgtcgaacgcgttctgaaggtcatgcagggctttgacccggttggcatttttgcc
cgcgatctggcggaatgtctggaattgcaactgcgcgaactcaaccggtttgatccggcg
atggcagcccttctggccaatcttgatttgctggccaagcgggactttgaccgcctgcgt
cgggtgtgtggtgtcgattcggatgatctccatgacatgatcgccgagatcaaaaccctt
gatccgcgcccaggcaagaccgccgatggcgaaatcgcaactccggtgatcccggacgtt
ttgatgcgtgcggcgggcaatggcaactggcatctggaactgaattccgaagccctgccg
cgggttctggtcaatgaagactatgtcgcccagattgggtcgggcctgcgcgatcgcgaa
gagcgcggtttcatgagtgagaagctgcaaagtgccaactggctggtcaaggcgctgcat
cagcgtgcgaccaccatcatgaaggtcgccagcgaaatcgtgcgtcagcaggacgggttc
tttacccacggggttgcgcatctgcggccactgatcctgcgcgacatcgccgaagcaatt
ggcatgcatgaaagtacggtttcacgtgtgaccaacggcaagttcatgtcgacgccgcgc
ggcatgttcgagctgaaatatttcttcaccacggcaatttcatcttcagatggtggcgat
gcctattcgtccgaagcggtgcgtcaccggatcaagtccttgatcgacaacgaagaaccc
aagaagattttgtcggatgacaaactggttgagcttctgggcaaggaagggatcgacatc
gcgcgtcgaacagtggcaaaataccgcgaagcgatgcgcatcccatcgtcagtgcagcgt
cggcgcgagaaaaaatcacgtgcttcctag
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