Candidatus Endolissoclinum faulkneri L2: A1OE_241
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Entry
A1OE_241 CDS
T02365
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thal
Candidatus Endolissoclinum faulkneri L2
Pathway
thal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1OE_241 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thal03021
]
A1OE_241 (rpoC)
03400 DNA repair and recombination proteins [BR:
thal03400
]
A1OE_241 (rpoC)
Enzymes [BR:
thal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1OE_241 (rpoC)
Transcription machinery [BR:
thal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1OE_241 (rpoC)
DNA repair and recombination proteins [BR:
thal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1OE_241 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF294
Motif
Other DBs
NCBI-ProteinID:
AFX98443
UniProt:
K7Z3B7
LinkDB
All DBs
Position
complement(224844..228977)
Genome browser
AA seq
1377 aa
AA seq
DB search
MNELVNIFGRPSGLQRFDTIQISIASQDRMKSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGITCEKCGVEVTLSRVRRERMGHIDLASPVVHIWFLKSL
PSRIGLLLDMTLKDLERVLYFENFIVTDPLLSPLKEKQLLSEEEYYQAQDEYGDGAFVAQ
IGAEALKTILSSLDMEATHNAINVELRETGSEAKRKKLVKRLKIIEAFQESSSRPEWMIM
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSGMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
DLLLHQCGLPKKMALELFKPFIYSKLELYGMASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIILGLYHLTMERENQPGEGMIFADPYEVDHAIDN
GIVTLYTKVQARIATYDENGNKVVRRIKTTPGRLKLSLLLPDNPKLGFEMINCLMTKKEV
SNIIDMVYRHCGQKETVIFADRLMNLGFSHACRASISFGKDDLVIPDAKQGLVDXANEEV
KQLEQQYLDGLITQGEKYNKVVDVWSRCTDQVADKMMSVIKEDDGINPVNAVWMMAHSGA
RGSANQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIVTEIDCGTSNGITVKPVIDGGEVIEPLGDRILGRTTVNEVLN
PVNGAVIIKKGQTIDETMVEEIERADIDSVLIRSVLTCKTHPGVCATCYGRDLARGTLVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSTVEATFGTIVRLNNRNVVTNSD
GVLVVMNRNTEIILTDEQGRERARHRVPYGAKLFVDNGVVVESGYKMAEWDPYTIPIITE
CEGVTHYVDLVEGLSMREITDEATGISSRVVIDWKQQARGNELKPRITLRNKLGEVIQLA
NSLEARYFMSVDAVLSVDNGSQVKAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAVITETDGKIEFGKDYKTKRRVIVRPEEENAVPIEYMIPKGKHLAVQEGDFVQKGDMLL
DGARVPHDILGIMGVEALADYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEVIKTGD
TTLLLGESIDRDEYKKANDKVLANDLRPAVAKPVLQGITKASLQTKSFISAASFQETTRV
LTEAAVSGKEDGLDGLKENVIVGHLIPAGTGSVMHRLRRIAADRDQLLSLTAIDSKH
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagttagtgaacatttttggtcggccaagcggactacaaagatttgacactatc
caaatctcaattgctagccaagatcgcatgaaatcatggtcttttggtgaaatcaaaaaa
ccggagactattaattaccgaacttttaaacctgagcgcgacggtttgttttgcgcccga
atatttggtcctatcaaggactacgagtgtttgtgtggtaaatataaacgtatgaagtat
cgcggtatcacctgcgagaaatgtggtgtagaggttacactctccagagtacgtcgtgaa
cgaatgggccatattgatttagcctcaccggttgttcatatttggtttcttaaatcacta
cctagccgtatcggtcttctgcttgacatgactctaaaagatttagagagggttttgtat
tttgagaattttatcgtcactgaccctttactatctccattgaaagaaaaacaacttctt
agcgaagaggaatattatcaagcacaagatgaatacggggatggcgctttcgtcgcccaa
attggggctgaagctctgaaaactattctctctagcctagatatggaagctacgcataat
gcaattaacgtagaattacgcgaaactggttctgaagccaagcgtaaaaaattagttaag
cgtttaaaaataattgaagcatttcaagaatctagttctcgcccagaatggatgatcatg
gatgtaattccagtcattccgcctgaattgcgtcctctagtgccgttggatggtgggcgc
tttgctacatctgatctaaacgacctgtatcgccgtgtaattaatcgtaataatcgttta
aagcgcttgatagaacttcgtgcgccagatataattgtgcgcaatgaaaagagaatgctg
caggaagcagttgatgctttgtttgacaatggccggcgtggacgcgttattacgggtgcc
aataagcgtcccttaaagtcacttagtggcatgctaaaaggcaaacaaggtcgttttcgt
caaaatttactaggtaagcgtgtcgactattcggggcgctcagtcatagtagttggtcca
gatctactcttacatcagtgtgggctaccaaaaaaaatggcattagagttgtttaagcca
tttatttattctaagcttgaactttacggtatggcaagcactatcaaggctgcaaagcgc
atggttgaaaaagagcgtcctgaagtttgggatattttggaagaggtaattcgtgaacat
ccggttatgttaaatcgggcacctaccttgcaccgtcttggcattcaagcatttgagcca
aagcttgttgaaggtaaggcaatccaacttcatccactggtttgtacagcgttcaatgct
gattttgacggcgaccaaatggcggttcatgtgccattatctctagaagctcaacttgaa
gctcgtgtgcttatgatgtcaaccaacaacattttaagtccggccaacggtaagccaatc
attgtaccatcacaagatattatcctgggactataccacctaactatggaacgcgaaaat
caaccaggtgagggcatgatatttgccgatccttacgaagtagatcacgcgattgataac
ggcatagtcactttgtatacaaaagtacaagctcgcatagcaacatatgacgaaaatggc
aacaaggtagttaggcgtataaaaaccacgcctgggagacttaaattatctttattgctc
ccggataatccaaaattaggattcgaaatgattaactgtctgatgacaaaaaaggaagta
tctaatattatcgacatggtgtatcgacactgtggacaaaaagagacagtaatttttgca
gatcgtttaatgaatttagggtttagtcatgcttgtcgtgcaagcatttcatttggtaaa
gatgacttagtaattccggatgctaaacaaggtttagttgacgrtgctaatgaggaagtg
aagcaacttgagcagcaatatcttgatggtctgattactcaaggcgaaaaatataacaaa
gtagttgatgtatggtcacgttgcacagatcaagtcgccgataaaatgatgtcagtaatt
aaagaagatgacggaataaatcctgtaaatgccgtatggatgatggcacattccggtgca
cgtggttctgctaaccaaattaaacaattggctggtatgcgtggcctaatggctaaacca
tcaggcgaaatcattgaaactcctattatctctaactttaaagaaggtttgactgtgctt
gagtactttaactcaacccatggtgctcgtaaaggactagctgacactgcgctcaaaaca
gcaaattcgggttatttaacccgtcgtttggttgacgttgctcaggattgtattgttaca
gaaattgattgcggtacttcaaacggaataacagtaaaacccgttatagacggaggtgaa
gtaatagaacctttaggagaccgtatccttggtcgtactacagtgaatgaagtgctaaac
ccagttaatggtgcagtaatcattaaaaaaggccaaactatagacgaaaccatggttgaa
gaaattgagcgtgcagatattgattcagttttgatacgctcagttctaacatgtaaaaca
catcctggtgtttgtgctacctgttatggtcgtgatttggctcgtggtacactggtaaat
atcggcgaggctgttggtgtaattgctgctcaatcgatcggtgagcctggtacacagtta
actatgagaacattccacataggtggtgctgctcaacgtggtgctgaacaatctactgtc
gaggctacttttggtacaattgtacggttaaataatcgtaatgttgttactaactctgac
ggtgtattagtagtaatgaatcgtaacactgaaatcattttgaccgatgagcaagggcgt
gagcgggcacgtcaccgcgtaccttacggagctaaattatttgttgataacggtgttgtt
gttgaatctggctacaagatggcagagtgggatccttataccattcctattattactgag
tgtgaaggagttacccactacgtcgacttggtagaaggtttatccatgcgcgaaataaca
gatgaagctactggtatctcttcccgggtcgtgattgactggaaacagcaagctagaggc
aacgaactaaagccgcgcataactttacgtaacaaattaggcgaggtaattcaacttgcc
aatagtttggaagctcgctatttcatgtcagttgatgctgtactatccgttgataatggt
tcccaagtgaaagccggtgacgttttagcacgtattccacgcgagtcctcgaaaactcgt
gacattactggtggtttaccacgcgtggctgaactattcgaagctcgccgtccgaaggac
tttgctgtaattacagaaactgacggtaaaatagaatttggtaaggactacaagaccaag
cgtcgagttatagtacgtccagaggaagaaaacgccgttcctatagagtatatgatccca
aaaggtaagcatttagctgtccaagaaggagatttcgtacaaaaaggtgatatgttgctt
gatggagcacgagttccgcacgacattctaggaattatgggtgttgaagctctggctgac
tatcttattaatgaaattcaagaagtttatcgtttgcaaggagttaagattaatgataaa
catatcgaagtaattgttcgccagatgttgcaaaaagttgaagtaatcaaaactggcgat
acgactttacttttaggtgaaagcattgaccgtgatgaatacaagaaggctaatgacaaa
gtcttagcgaatgatttacgcccagctgtagccaaaccggtactccagggtataactaaa
gcttcgcttcaaacaaaatcttttatttctgcagcgtcttttcaggaaactactcgtgtt
ttaactgaagctgctgtatccggaaaggaagatggtctagatggactaaaggaaaatgtc
attgtcggtcaccttatacctgcaggcacgggcagcgtcatgcatcgtttgcgaagaata
gctgcagatcgtgatcaattgctctcactaactgctattgacagcaaacattga
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