Thermobifida halotolerans: NI17_001015
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Entry
NI17_001015 CDS
T08032
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI17_001015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thao03019
]
NI17_001015
03016 Transfer RNA biogenesis [BR:
thao03016
]
NI17_001015
Enzymes [BR:
thao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NI17_001015
Messenger RNA biogenesis [BR:
thao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NI17_001015
Transfer RNA biogenesis [BR:
thao03016
]
Prokaryotic type
tRNA degradation factors
NI17_001015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
PCB_OB
DUF1490
KH_2
Motif
Other DBs
NCBI-ProteinID:
UOE19877
UniProt:
A0A399G0Q5
LinkDB
All DBs
Position
236654..238948
Genome browser
AA seq
764 aa
AA seq
DB search
MEGVYSAEAVIDNGRFGTRTIRFETGRLARQAAGSATAFLDDETMVLSATTASKRPKETL
DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFQKGLRNEIQIV
ETILALHPEHLYDVVAINAASMSTQLAGLPFSGPIGGVRVALIEGQWVAFPTHSELSNAT
FDMVVAGRVLDSGDVAIMMVEAESTSNTLKLVREGAVGPNEQTVAEGLEAAKPFIKVLCR
AQQTVADAAAKETAEYPIFLDYQDDAYTAVEGAIRSELASALTIADKQERETELDRVKAL
AAEKLAEDFEGREKELAAAFRALTKKLVRERIINEKVRIDGRGTKDIRSLTAEVNVVPRV
HGSALFERGETQILGVTTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGETGRVGSPK
RREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLMAAGVPL
KDMVAGIAMGLISEGGEYVTLTDILGAEDAYGDMDFKVAGTRELITALQLDTKLDGIPAE
VLAAALQQARGARLAILDVMAEAIERPAEMSPHAPRILTVKVPVDKIGEVIGPKGKMINS
IQDDTGAEITIEDDGTIYIGATDGPSAEAARDTINSIANPTMPEVGDRYLGTVVKTTAFG
AFVSLLPGKDGLLHISQIRKLHGGQRIENVEDVISIGDKIQVEIREVDDRGKLSLVPVEV
VEAENASGEESGNGARKPEGEGGGNEQPRRRRRTRSSSRSNENT
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgtgtattccgccgaggccgtcatcgacaacggccgcttcggcacccgtacc
atccgcttcgagaccggtcgactggcgcgccaggcagccggatcggccaccgctttcctc
gacgacgagaccatggtcctgtcggcgacgaccgcgtcgaagcgacccaaggagacactc
gacttcttcccgctgaccgtcgacgtcgaagaacgcatgtacgccgcggggcgcatcccc
ggctcgttcttccgccgtgagggccgtccctccgaggacgccatcctcacctgtcgactg
atcgaccggccgctgcggccgtccttccagaaggggctgcgcaacgagatccagatcgtc
gagacgatcctggcgctgcaccccgagcacctctacgacgtggtcgccatcaacgccgcc
tcgatgtccacccagctcgccgggctaccgttctccggccccatcggcggcgtgcgcgtg
gcgctcatcgaaggccagtgggtggcgtttcccacccacagcgaactgtccaacgccacc
ttcgacatggtcgtggccggccgggtgctggacagcggcgacgtcgcgatcatgatggtc
gaggccgagtccacctcaaacaccctcaagctcgtccgggaaggcgccgtcggccccaac
gagcagaccgtcgccgagggcctggaggccgccaagccgttcatcaaggtgctgtgccgg
gcgcagcagacggtggccgacgccgcggccaaggagaccgccgagtacccgatcttcctc
gactaccaggacgacgcctacaccgccgtcgagggagcgatccgctccgaactggcctcc
gcgctcaccatcgccgacaagcaggagcgggagaccgaactcgaccgggtcaaggcgctg
gccgccgagaagctcgccgaggatttcgaagggcgcgagaaggagctcgccgccgcgttc
cgcgcgctcaccaagaaactggtgcgtgaacgcatcatcaacgagaaggtccgcatcgac
ggccgcggcaccaaggacatccgctccctgaccgccgaggtcaacgtcgtaccccgggtg
cacggctcggccctgttcgagcgcggcgagacccagatcctgggcgtcaccacgctgaac
atgctgcgcatggagcagaccatcgacacgctcaaccccgagcggaccaagcgctacatg
cacaactacaacttcccgccgtactccaccggcgagaccggccgggtgggctcgcccaag
cgccgcgagatcggccacggcgcgctcgccgaacgcgccctcatcccggtgctgccctcg
cgcgaggagttcccctacgccatccgccaggtgtcggaggccatcggctccaacggctcc
acctccatgggctcggtgtgcgcctccacgatgtcgctgatggcggcgggcgtgccgctc
aaggacatggtcgcgggcatcgccatgggactgatcagcgagggcggcgagtacgtcacc
ctcaccgacatcctcggcgccgaggacgcctacggcgacatggacttcaaggtcgccggc
acccgcgaactcatcaccgcgctgcagttggacaccaaactcgacggcatccccgccgag
gtgctggccgccgcgctgcagcaggcccgcggggcgcgcctggccatcctcgacgtcatg
gccgaagccatcgagcgtcccgccgagatgagcccgcacgcgccgcgcatcctcaccgtc
aaggtgcccgtcgacaagatcggcgaggtcatcggccccaagggcaagatgatcaactcg
atccaggacgacaccggcgccgagatcaccatcgaggacgacggcaccatctacatcggc
gccaccgacggtccctccgccgaggccgcccgcgacacgatcaacagcatcgccaacccg
acgatgcccgaggtcggcgaccgctacctcggcacggtcgtcaagaccaccgcgttcggc
gcgttcgtgtcgctgctgcccggcaaggacggcctgctgcacatctcgcagatccgcaaa
ctgcacggcggccagcggatcgagaacgtcgaagacgtcatcagcatcggcgacaagatc
caggtcgagatccgcgaggtcgacgaccgcggcaagctctccctcgtcccggtcgaggtc
gtcgaggccgagaacgccagcggtgaggagtccgggaacggagccaggaagccggagggc
gagggaggcggaaacgagcagccgcgccgtcgccgccgcacccgctcctccagtcgctcc
aacgagaacacctga
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