Thermobifida halotolerans: NI17_001070
Help
Entry
NI17_001070 CDS
T08032
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
thao
Thermobifida halotolerans
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
thao03009
]
NI17_001070 (rimO)
Enzymes [BR:
thao01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NI17_001070 (rimO)
Ribosome biogenesis [BR:
thao03009
]
Prokaryotic type
ribosomal protein modification factors
NI17_001070 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
UOE19888
UniProt:
A0A399G0R5
LinkDB
All DBs
Position
251438..252889
Genome browser
AA seq
483 aa
AA seq
DB search
MSSRRTVSLVTLGCARNEVDSEELAGRLAADGWTLVDPDDGENADVVVVNTCGFIEAAKQ
DSIETLLNAAEDGTKVVAAGCMAERYGAELAEAMPEAQVISFDDYTQISRRLDDVLAGRP
LVPHTPRDRRTLLPISPAERPATPDTHVPGHLSFHDDITPLPEGVAPASGPTVPRLRLTG
GPVANLKIASGCDRRCAFCAIPAFRGAYISRRPDDVLREAEWLADQGVRELFLVSENSTS
YGKDLGDLRALEKLLPRLAEVPGIERVRVSYLQPAEVRPGLVDVLTGTPKVVPYFDLSFQ
HASGPLLRRMRRFGDRPRFLELLDTIRSRTPEAGVRSNFIVGFPGETEADFAELVAFLEQ
ARLDAIGVFGYSDEDGTEAAGHDGKLPEEVITARVEHLTQLAEELMAQRAEERVGSTVDV
LIETELDEGAYEGRSAHQAPEVDGSTIVYADTRPRVGDIVPATVLTAMGVDLVAEHQEDT
DTP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcgccgtactgtctcgctcgtcaccctcgggtgcgcgcgcaacgaggtcgac
tccgaagaactcgccggacggctggccgccgacggctggaccctggtcgaccccgacgac
ggagagaacgccgacgtcgtcgtcgtcaacacctgcggcttcatcgaggccgccaaacag
gactccatcgagacgctgctcaacgcggccgaggacggcaccaaggtcgtcgccgcgggc
tgcatggccgaacggtacggggcggaactggccgaagccatgcccgaagcacaggtcatc
agcttcgacgactacacccagatcagccggcgcctcgacgacgtcctcgccggacgccca
ctcgtcccccacaccccccgcgaccgccgcaccctgctgcccatctccccggccgaacgc
cccgccacacccgacacccacgtccccggccacctgtcgttccacgacgacatcaccccc
ctgcccgaaggcgtcgcccccgcctccggacccaccgtcccccgcctccgcctcaccgga
ggccccgtcgccaacctcaagatcgcctccggctgcgaccgccgctgcgccttctgcgcc
atccccgccttccgcggcgcctacatctcgcgccgacccgacgacgtcctccgcgaggcc
gaatggctcgccgaccagggcgtccgcgaactgttcctggtcagcgagaactccacctcc
tacggcaaggacctcggcgacctgcgcgccctggagaaactgctgccccgcctcgccgag
gtgcccggcatcgaacgcgtccgggtcagctacctgcaacccgccgaagtccgccccgga
ctcgtcgacgtactcaccggcacccccaaggtcgtgccctacttcgacctgtccttccag
cacgccagcggccccctgctgcgccgcatgcgccgcttcggcgaccgcccgcgcttcctg
gaactgctcgacaccatccgctcccgtacccccgaggcgggcgtccgctccaacttcatc
gtcggcttccccggcgagaccgaggccgacttcgccgaactggtggccttcctggagcag
gcccgcctcgacgccatcggagtcttcggctactccgacgaggacggcaccgaagcggcc
ggacacgacggcaaactccccgaagaggtcatcaccgcccgagtcgaacacctcacccag
ctcgccgaggaactgatggcccaacgcgccgaggaacgcgtcggctccaccgtcgacgtg
ctcatcgaaaccgaactggacgaaggcgcctacgaaggacgctccgcccaccaggctccc
gaggtggacggcagcaccatcgtctacgccgacacccgaccgcgcgtgggcgacatcgtc
cccgccaccgtgctcaccgccatgggagtcgacctcgtcgccgaacaccaggaagacacc
gataccccgtga
DBGET
integrated database retrieval system
