Thermobifida halotolerans: NI17_001475
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Entry
NI17_001475 CDS
T08032
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
thao
Thermobifida halotolerans
Pathway
thao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NI17_001475 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thao03021
]
NI17_001475 (rpoD)
Transcription machinery [BR:
thao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NI17_001475 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
KORA
HTH_28
Motif
Other DBs
NCBI-ProteinID:
UOE21791
UniProt:
A0AA97M682
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All DBs
Position
342377..343387
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AA seq
336 aa
AA seq
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MEAVDPAPEPPERYGGDVAGQEEHPGARTSSGDLVRVYLREIGRVPLLTAAEEVELAKAI
EIGLYAEQKLRAARAGTVPRQYDPDRVADLRQLVHEGEVAKRRLIEANLRLVVSIAKRYL
GRGLLLLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAITRAIADQARTIRVPVH
MVESINKLARTRRRMHQELGREPTLEELSRELNVDDERVVEIQRVSQEPISLYTPVGEED
SAFGDFIEDSDVVPPVEAAAFVMLQDQLARVLNGLSEREQRVIALRYGLADGKPHTLEEV
GREFGVTRERIRQIESKTLAKLRQPSCAQILRDYLE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
gtggaggcggtcgacccggcaccggagcccccggaacggtacggcggtgacgtcgccggc
caggaggagcaccccggagcccgcacgtcctccggcgacctcgtccgcgtctacctgcgc
gagatcggccgggtccccctgctcacggcggcggaggaggtggaactcgccaaggcgatc
gagatcggactctacgccgagcagaagctgcgtgccgcgcgtgccgggaccgtcccccgg
cagtacgaccccgacagggtcgccgacctgcggcaactggtccacgagggcgaggtcgcc
aaacggcggctcatcgaggccaacctgcgtctggtggtctccatcgccaaacgctacctg
gggcgcggcctgctgctgctcgacctggtccaggagggcaacctcggcctgatccgcgcg
gtcgagaagttcgactacgccaggggctacaagttctccacctacgccacctggtggatc
cgccaggccatcacccgcgccatcgccgaccaggcgcgcaccatccgcgtcccggtgcac
atggtggagagcatcaacaagctcgcccggacccgccgccgcatgcaccaggagctgggg
cgtgagccgacgctggaggagctctcccgcgagctgaacgtcgacgacgagcgcgtcgtg
gagatccagcgcgtctcccaggagccgatctccctgtacacgccggtcggagaggaggac
tccgccttcggcgacttcatcgaggactccgacgtggtcccgccggtggaggcggcggcg
ttcgtcatgctccaggaccagttggcccgggtgctgaacggactctccgagcgggagcag
cgcgtcatcgccctccgctacggcctggccgacggaaaaccgcacaccctggaggaggtc
ggcagggagttcggagtcacccgggagcgcatccggcagatcgagtccaaaacgctcgcc
aaactgcgccagccctcgtgcgcccagatactccgcgactatctggaatga
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