Thermobifida halotolerans: NI17_003425
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Entry
NI17_003425 CDS
T08032
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03030
DNA replication
thao03410
Base excision repair
thao03420
Nucleotide excision repair
thao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NI17_003425 (polA)
03410 Base excision repair
NI17_003425 (polA)
03420 Nucleotide excision repair
NI17_003425 (polA)
03440 Homologous recombination
NI17_003425 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thao03032
]
NI17_003425 (polA)
03400 DNA repair and recombination proteins [BR:
thao03400
]
NI17_003425 (polA)
Enzymes [BR:
thao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NI17_003425 (polA)
DNA replication proteins [BR:
thao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NI17_003425 (polA)
DNA repair and recombination proteins [BR:
thao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NI17_003425 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NI17_003425 (polA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_lambd_f
HHH_5
DNA_pol_A_exo1
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
UOE20305
UniProt:
A0AA97M4T3
LinkDB
All DBs
Position
761912..764698
Genome browser
AA seq
928 aa
AA seq
DB search
MSPAHPRIRGVVNTQATPEQTRPSETGEGGGRPRLLLVDGHSMAFRAFFALPAEKFVNSA
GQATNAVYGFTSMLVKLLRDERPTHIAVAWDRSEPTFRHEEYAEYKAGRSETPPEFPGQV
GLLQELLGLLGVTSLSVAGYEADDIIATLAARGLAGGMEVLIASGDRDTFQLVGDCCTVL
YPGKSLSDLVRMTPEAVEAKYAVPPERYRDLAALVGEKADNLPGVPGVGPKTAAKWLARY
GSLDELVARADEVGGKAGQSFRDHLDDVLRNQRLNRLDTDVEVGVAVAEMTLDGWNRDGI
NLLFDNLEFASTLRERLFAVLGESEPEAAATASDEGFAVELVEVAPGALADWLAAEIAAG
ARTGLAVEGTWGRGGGDVTRLALALPAGRAVCLDPARLDPADEAALADWLADPAYPKALH
DAKGPILALRARGWELAGLDSDTAIAGYLAMPGRRNFDLADLCTRYLGRELTERDTGGAQ
LTLDLGGGDEQAAARHALATRALATLELALALDADLVKRGAADLLRDLEIPLVGVLARME
EAGIAADLGYLRGLEAEFAAAVRQAVEEAHRVVGREFNLGSPKQLQQILFEELGLPKTKR
IKTGYTTDADALAWLAAQADNELPVILLRHRDQTKLRTTVEGLIKTVADDGRIHTTFNQT
VAATGRLSSADPNLQNIPVRTDAGRRIRRAFVVGEGYEHLLTADYSQIELRIMAHLSEDE
ALIEAFQTGYDFHAQIAARVFGVPVDRVDGEARARIKAMNYGLAYGLSDYGLSQQLGITP
KEARVLMEDYFSHFGRVRDYLEAVVARARRDGYTATMLGRRRYLPDLNSDNRQRREMAER
MALNAPIQGSAADIIKLAMLRVARALRDGGFASRMLLQVHDELVLEVAPGELDAARALVV
EHMSGAQELRVPLAVSVGIGSNWHDAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctgcgcatcctaggattcgtggtgtggtgaacacacaggcgacccccgagcag
acccgtccctccgagaccggcgaggggggtgggcgcccccggctgctgttggtggacggc
cactccatggccttccgcgcgttcttcgcgcttccggcggagaagttcgtcaacagcgcg
ggccaggccaccaacgccgtctacggcttcacctcgatgctggtcaaactgctgcgcgac
gagcggcccacgcacatcgcggtggcctgggaccgttccgagccgaccttccggcacgag
gagtacgccgagtacaaggcgggccgctcggagaccccgccggagtttccgggacaggtg
gggctgctgcaggagctgctggggctgctgggcgtcaccagtctctcggtcgcgggctac
gaggccgacgacatcatcgccacactggccgcgcgggggctcgccggaggcatggaggtg
ctcatcgcctcgggcgaccgcgacaccttccagttggtcggtgactgctgcacggtgctg
tacccgggtaagagcctgtccgacctggtccgcatgacgccggaggcggtggaggccaag
tacgcggtgccgcccgagcgctaccgcgacctcgccgcgctggtgggtgagaaggccgac
aacctgccgggcgtgccgggagtggggcccaagaccgccgccaagtggctggccaggtac
ggctccctggacgaactggtggcccgggccgacgaggtcggcggcaaggccggacagagc
ttccgcgaccacctcgacgacgtgctgcgcaaccagcggctcaaccggctcgacaccgac
gtcgaggtcggcgtcgcggtggccgagatgacgctggacggctggaaccgcgacggcatc
aacctgctgttcgacaacctggagttcgcctcgacgctgcgcgaacggctgttcgcggtg
ctgggcgagagcgaacccgaggccgcggcgaccgcgtcggacgagggcttcgccgtcgaa
ctggtcgaggtggctccgggggcgctcgccgactggctggccgccgagatcgccgcgggg
gcgcgtaccggactggccgtcgaggggacgtgggggcgcggcggcggcgacgtcacccgg
ctggccctcgcgctgcccgcggggcgggccgtctgcctggatccggcgcggctggacccc
gccgacgaggccgcgctcgccgactggctggccgaccccgcctaccccaaggccctgcac
gacgccaaggggccgatcctggcgctgcgggcgcgcggctgggagctggccggactcgac
tccgacacggccatcgccggatacctggcgatgcccggccgccgcaacttcgacctggcc
gacctgtgcacccgctacctcggccgcgagctgaccgaacgcgacacgggcggcgcccag
ctcaccctcgacctcggcggtggggacgagcaggcggcggcccgccacgcgctggccacg
cgcgccctggccacgctggagctggcgctggccctggacgccgacctcgtcaagcgcggt
gccgccgacctgctgcgtgatctggagatccccctggtgggggtgttggcccggatggag
gaggcggggatcgccgccgacctgggctacctgcggggcctggaggcggagttcgccgcc
gcggtgcgccaggcggtggaggaggcgcaccgggtggtgggccgagagttcaacctgggc
tcgcccaagcagttgcagcagatcctcttcgaggagctggggctgcccaagacgaagcgg
atcaagaccggctacaccaccgacgccgacgcgctggcctggctggcggcgcaggccgac
aacgagctgccggtcatcctgctgcgccaccgcgaccagaccaagctgcgcaccaccgtc
gaggggctgatcaagacggtcgccgacgacgggcgcatccacaccaccttcaaccagacg
gtggccgccaccggacggctcagctcggccgatcccaacctgcagaacattccggtgcgc
accgacgccggtcggcgtatccgccgtgccttcgtggtgggagagggctacgagcacctg
ctcaccgccgactacagccagatcgaactgcggatcatggcgcacctgtcggaggacgag
gcgctgatcgaggcgttccagaccggctacgacttccacgcccagatcgccgcgcgggtc
ttcggggtccccgtggaccgggtcgacggcgaggcgcgggcccggatcaaggccatgaac
tacggcctggcctacggactgagcgactacggactgtcgcagcagctgggtatcacgccc
aaggaggcgcgggtgctcatggaggactacttctcccacttcggcagggtccgcgactac
ctggaggccgtggtggcccgggcgcgccgcgacggctacaccgccaccatgctgggacgc
cgccgttacctgcccgacctcaacagcgacaaccggcagcgccgtgagatggccgagcgc
atggcgctcaacgccccgatccaggggtcggccgccgacatcatcaaactcgcgatgctg
cgggtggcccgggcgctgcgcgacggcgggttcgcctcgcggatgctgctgcaggtccac
gacgaactggtgctggaggtcgcccccggcgagttggacgcggcgcgcgcgctggtggtc
gagcacatgtccggcgcccaggagttgcgggtgccgctggccgtgtcggtggggatcggg
tccaactggcacgacgccgcgcactga
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