Thermobifida halotolerans: NI17_004485
Help
Entry
NI17_004485 CDS
T08032
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
thao
Thermobifida halotolerans
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thao03016
]
NI17_004485
Enzymes [BR:
thao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NI17_004485
Transfer RNA biogenesis [BR:
thao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NI17_004485
Prokaryotic type
tRNA splicing ligases
NI17_004485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UOE20491
UniProt:
A0A399G538
LinkDB
All DBs
Position
1022076..1023263
Genome browser
AA seq
395 aa
AA seq
DB search
MPYTEVPGARVPIRMWTDPSTVEQPAMDQLRNVTTLPWVHGLAVMPDVHYGKGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVKTSLRAEDLPDDLRGLRSGLERAVPVGHQAHREPVDPR
RVPEVRSRDWDRFWKRFDDLTEAVHSRRERAACQIGTLGGGNHFLEVCLDDDGAVWVVLH
SGSRNIGNELAGHHIDRARGLPHNRDLPDRDLAVFVAGTPEMDAYRHDLFWAQDYARRNR
EVMMGLACGVLRERFPGVAFPEWISCHHNYVAEETYDGVDVLVTRKGAIRAGRGDLGIIP
GSMATGTYIVRGLGNPASFNSASHGAGRRMSRTRARKTFTRADLVEQTRGVECRKDIGVV
DEIPAAYKDLDEVIAAQTDLVEVVARLRQVVCVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccctacaccgaggttccgggagcgcgcgtcccgatccggatgtggaccgacccgagc
acggtggagcagccagccatggaccagctccgcaacgtcaccacgctgccgtgggtgcac
ggcctggccgtcatgcccgacgtgcactacggcaagggagcgaccgtgggctcggtcatc
gcgatgcgcgacgccgtctccccggccgccgtcggcgtcgacatcggctgcggcatgacc
gccgtcaaaacgtcgctgcgcgccgaggacctgcccgacgacctgcgcgggctgcgctcc
ggactggagcgggccgtgcccgtcggccaccaggcgcacagggagcccgtcgacccgcgc
cgcgtccccgaggtgagaagccgcgactgggaccgcttctggaagcgcttcgacgacctg
accgaggccgtccactcccgccgcgagcgcgccgcctgccagatcggcaccctcggcggc
ggcaaccacttcctcgaggtgtgtctggacgacgacggcgcggtgtgggtcgtgctgcac
tccgggtcccgcaacatcggcaacgaactggccggacaccacatcgaccgggcccgcggc
ctgccgcacaaccgggacctgcccgaccgcgacctcgcggtgttcgtcgcgggcacgccc
gagatggacgcctaccgccacgacctgttctgggcgcaggactacgcgcgccgcaaccgc
gaggtgatgatgggcctggcctgcggcgtgctgcgcgagcggttccccggcgtggccttt
cccgagtggatctcctgccaccacaactacgtggccgaggagacctacgacggcgtcgac
gtgctcgtcacccgcaagggcgcgatccgcgccggacgcggcgacctcggcatcatcccg
ggctcgatggcgaccggcacctacatcgtgcgcgggctcggcaatccggcgtcgttcaac
tccgcctcgcacggcgcgggccgccgcatgagccgcaccagggcccgcaagaccttcacg
cgggccgacctggtcgagcagaccaggggagtggagtgccgaaaagacatcggcgtcgtc
gacgagatccccgccgcctacaaggacctcgacgaggtcatcgccgcccagaccgacctg
gtggaggtcgtggcgcgcctgcggcaggtggtgtgcgtcaaggggtga
DBGET
integrated database retrieval system
