Thermobifida halotolerans: NI17_005510
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Entry
NI17_005510 CDS
T08032
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI17_005510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thao03019
]
NI17_005510
03400 DNA repair and recombination proteins [BR:
thao03400
]
NI17_005510
Enzymes [BR:
thao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NI17_005510
Messenger RNA biogenesis [BR:
thao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NI17_005510
DNA repair and recombination proteins [BR:
thao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NI17_005510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
DUF3553
PcrA_UvrD_tudor
HTH_11
DUF7342
CUSTOS
Motif
Other DBs
NCBI-ProteinID:
UOE20667
UniProt:
A0AA97LYK1
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All DBs
Position
1259180..1260856
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AA seq
558 aa
AA seq
DB search
MSDFSAGQTGGPARSGGGARDRLRRRAEEVFDWPSLRPEQLRAMETLLEGRDVLVVMPTG
AGKSAIYQVPALELDGPTVVVSPLIALQRDQARQLDASDAPDAVAVNSAQRGGDSERAWD
AVDSGAAEYLFLAPEQLARPEVVDRLREARPSLFVVDEAHCVSEWGHDFRPDYRQLEPVI
DRLGHPPVLALTATAGGPVRDDIVAGLGLRDPVRIVTGFDRPNLHLQVRAFASDDGKRAA
VLDWAASAPTPGLVYAATRADTERYAADLAGRGVRAAAYHAGLPAAERRRAHGEFLADRI
DVVVATSAFGMGIDKPNVRFVAHASIPESLDAYYQQIGRAGRDGERAEAVLFHRTEDVGR
QRFRTARSVGAADLRATAETVRDQEGPVSAEDVGEETDRSRRAALNALNLLEEVDAVHAT
GRGGFAYGEEVSPREAERRASELADRRHRFERTRLEVMRNYAETRSCRRQFLLGYLGEVL
EWPCGFCDTCEAGTAFEQAEPGGAGEEFAVRSHVRHAEWGPGTVVHREADRLTVLFDEVG
YRTLSLPAVRDNDLLTEE
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacttctccgcaggtcagaccggtggtcccgcgcgttcagggggtggtgcgcgc
gaccggctgcggcgacgcgccgaggaggtgttcgactggccgagtctgcgccccgagcag
ctgcgggcgatggagacgctgctggagggccgggacgtgctggtcgtcatgcccaccggc
gcgggcaagtcggcgatctaccaggttccggcgctggagctggacggtcccacggtcgtg
gtgtcgccgctgatcgccctgcaacgggaccaggccagacaactcgacgccagcgacgcg
cccgacgccgtcgcggtgaactccgcgcagcgcggcggcgacagcgaacgggcgtgggac
gcggtggactccggtgcggccgagtacctgttcctggcgccggagcagttggccagaccg
gaggtggtggaccggctgcgggaggcgcggcccagcctgttcgtggtcgacgaggcccac
tgcgtgtccgagtggggccacgacttccgccccgactaccggcaactggaaccggtgatc
gaccggttggggcatcccccggtgctcgcgctgacggccaccgcgggcggaccggttcgc
gacgacatcgtggccggtctcgggctgcgcgatccggtgcggatcgtcaccgggttcgac
cgtcccaacctccaccttcaggtacgcgctttcgccagcgacgacggcaagcgcgcggcg
gtgctcgactgggccgcgtccgcgccgaccccgggactggtctacgccgccacccgcgcg
gacaccgaacgctacgccgccgacctcgccgggcgcggcgtacgcgcggcggcctaccac
gccggactgcccgcggcggagcgcaggcgggcgcacggggagttcctggccgaccggatc
gacgtggtggtcgcgacctcggcgttcggcatgggcatcgacaagccgaacgtccggttc
gtggcccacgcgtccatcccggagtccctggacgcctactaccagcagatcggacgcgcc
ggacgcgacggcgagcgcgccgaggcggtgctgttccaccggacggaggacgtcgggcgg
cagcggttccgcaccgcccgcagcgtgggcgccgccgacctccgcgcgaccgccgagacg
gtgcgcgaccaggaggggcccgtcagtgccgaggacgtcggagaggagaccgaccggtcc
cgccgcgcggcgctgaacgcgctcaacctgctggaggaggtcgacgcggtccacgcgacc
ggccggggaggcttcgcctacggcgaggaggtctctccccgggaggcggagagacgcgcg
tcggaactggccgaccggcggcaccggttcgagcgcacccggctggaggtcatgcgcaac
tacgcggagacccggtcgtgccgccgccagttcctgctcggctacctcggtgaggtgctg
gagtggccgtgcggcttctgcgacacctgcgaggcgggcacggcgttcgaacaggcggaa
ccgggcggagccggcgaggagttcgcggtgcgctcccacgtgcggcacgccgagtggggg
ccgggaacggtggtgcaccgggaggccgaccggctcaccgtcctgttcgacgaggtcggc
taccgcaccctgtcgctgcccgcggtccgcgacaacgacctgctcaccgaggagtga
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