Thermobifida halotolerans: NI17_008005
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Entry
NI17_008005 CDS
T08032
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI17_008005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thao03019
]
NI17_008005
03400 DNA repair and recombination proteins [BR:
thao03400
]
NI17_008005
Enzymes [BR:
thao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NI17_008005
Messenger RNA biogenesis [BR:
thao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NI17_008005
DNA repair and recombination proteins [BR:
thao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NI17_008005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PALP
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UOE21079
UniProt:
A0A399FZ27
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All DBs
Position
1809870..1812452
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AA seq
860 aa
AA seq
DB search
MTSDQWTQAQQLFSTWTEGHIIDIPAAGTVRRLRDALNGLRSGATGWRDIAALTRQVLLE
AQVRGNDSPLNVPRHPLFPTQEQWLQAHCGVTYGTDEHTLRVWGQPWVPGSLEGSAAEAA
ESDLRQVYLGLDSPQRRSLTERPGDPFWSATLGEEFQHYLSAGQQQTARSVALAPPGSTT
IVCLPTGHGKTFVALAAALLDDRSGVSVIVVPTVVLAIDLERRIRVLAEKRGCPSPTGRY
AYTGDLPAEVKERLTSDIRSGRQRVVLAAPEAVTHGLKRPLADAARAGLFRYFVLDEAHL
VDQWGNDFRPDFQSIAGLRHSWVSNAPEGRAPRTVAMSATLTDQQITTLRTLFGSPGPVE
VIWAKQVRSEPSYYIDQFTNEEERTAAVLKAATLLPRPLVLYVSKRKAAEDWVARLHNAG
MHRVARVTGTSSGEQRRDALQGWSGRFSEQDMPTRFDIVVGTSAFGLGVDLPDVRTVVHS
CLPETVDRYYQEVGRGGRDGSPSLAYMATAPADIATAESLSQGSIISDEKAWPRWQGMFH
SRTEDGAVFHLNLDALPIHLSSGYGRSKRWNIHTLNLMAQAGLIELRESTEPQRGQDEPE
ASWQRRLQEYYEQSDSRMDVVLVDGRTNEHDYFTARINETRARILDSQRAALEQLHKALR
GDRCIGDVFAEYYTVDDHITAPACRGCPHCRRGGPTSDLGFYQKGWEPNPSVVLWSKSHA
DPLSAFRPPDQACLSIWWDTEEERELLPELLVQLCRRGMPFLGGPGADEATVRRVQRDAL
PYPVVYDSDQSLVFTHPAPVIWVEDTDHETLTFEAAARFHSPDVLYLLHPRQLRHPERPD
QLLADLHTASIPLRTAWKAL
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtgaccaatggacgcaggcacagcaactcttctccacttggaccgaaggccat
atcatagacatccccgctgcgggcacggtccggcggttgagagacgcgctcaacggcctg
cgctccggagcaacagggtggcgggacatcgccgctctcacccggcaggtgctgttggag
gcacaggttcgtggcaacgactctccactgaatgtgccccgacatccgctgtttcccacc
caggagcagtggctccaggcccactgcggcgtcacctacggaaccgatgaacacaccctg
agggtgtggggccaaccgtgggttccgggaagtctcgaaggttccgcagccgaagcggcc
gaatccgacctgcgtcaggtgtacctgggtctggactccccacaacgccgttcactcacc
gagcgcccaggagaccccttctggtccgccacgttgggagaggagttccagcactatctg
tccgcaggccagcagcagaccgctcggtcggtcgccctggcacctcccggcagcaccacg
atcgtctgcctgcccaccggacacggcaaaacgtttgtggcattggcggccgcactgctg
gacgaccgtagtggcgtgtccgtcatcgttgtgcccactgtggtgctcgccatcgatctg
gaacggcgtatccgcgtgcttgcggagaaacgtggctgtccgtcgcctaccgggcgctac
gcgtacacaggagacctgcccgcggaggtcaaggaacgcctgacctccgacatccgctcc
ggtcggcaacgggtggtactggcggcgccggaagcggtcacacacggactcaagcgaccg
ttggcggacgcggcacgggcggggctgttccgctacttcgtactcgacgaggcacacctg
gtcgaccagtggggtaacgacttccggcctgacttccagtccatcgctggcctacgccac
tcctgggtgagcaacgcgccggaaggacgcgctcctcgcaccgtggcgatgagcgccacg
ctgaccgaccagcagatcactacccttcgcacgctgttcggctcgcccggtccggtggag
gtgatctgggcgaagcaggtacgcagcgaacccagttactacatcgaccagttcaccaac
gaggaagagcgcacagcggcggtgctgaaggcggccaccctgcttccccggccactggtg
ttgtacgtgtccaagagaaaagcagccgaggactgggtcgcccggctacacaacgcggga
atgcacagagtcgcccgggtcaccggaacctcctccggggaacaacgacgggacgccctt
caggggtggagtggccggttctctgagcaggacatgcccacccggttcgatatcgtggtc
ggcacttcggcattcggcctcggcgtcgacctacctgacgtccgcacagttgtgcactcc
tgtcttcctgaaacggtggaccgctactaccaggaggtcggtaggggcgggcgtgacggc
agtccttctctggcctacatggccaccgcccccgcggacatcgccacagcggagagcctg
agccaggggtcgatcatctccgatgagaaggcctggccgcgttggcagggcatgttccac
agccgtacggaggacggcgcggtgttccacctcaatctggacgctctacccatccacctt
tcttccggttacgggcgaagcaagcggtggaacatacatacgctcaacctgatggcgcaa
gccggcctaatcgaacttcgggagtccacagagccgcagcgcggccaggatgaacccgaa
gccagttggcaacgccgtctgcaggagtactacgagcagtcggactcccggatggacgtg
gtgcttgttgacggccgcacgaacgaacacgactacttcaccgctcggatcaacgagact
cgggcgaggatcctggacagtcagcgggcagctttggaacagctccacaaggcgttgcgc
ggcgaccgttgtatcggcgacgtattcgctgagtactacacggtggacgaccacatcacc
gctcccgcctgtcgcggttgcccgcactgccgtcgcggcggtcccacatccgacctcggt
ttctatcagaaggggtgggaacccaatcccagcgtcgtcctgtggtcgaagtcgcacgcg
gatccgctgtccgcgttccgtcctcccgaccaggcttgtctgagtatctggtgggacacc
gaggaggagcgtgaactactccccgaactgctggtccaactctgtcgtaggggaatgccg
ttcctcggcggccctggagcagacgaggcgacagtccgtcgcgtccagcgggacgccctg
ccctatccagtcgtctacgacagtgaccagagcctagtcttcacccatccggctccggtg
atctgggtggaggacacagatcacgaaacgctgaccttcgaagcagcggcgcgattccac
agccccgatgtcctgtacctgctgcatcctcggcagttgcgccacccggagcgccctgat
caactgttggctgacctgcatacagccagcatccccctccgtacagcctggaaagccctg
taa
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