Thermobifida halotolerans: NI17_010165 Help Entry NI17_010165       CDS       T08032                                  Name (GenBank) type IV secretion protein Rhs Organism thao  Thermobifida halotolerans SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RHS_repeat TEN_YD-shell PT-HINT Hom_end_hint SpvB Choline_bind_3 Hint DUF6443 CzcE Motif Other DBs NCBI-ProteinID:  UOE21969 UniProt:  A0AA97M1T4 LinkDB All DBs Position complement(2267895..2273771) Genome browser AA seq 1958 aa AA seqDB search MDGRTASSNNQTSWIGEGFSYAAGAIERSYTACSDDGQTAPNTTGDLCWKTDNATLSMQG HAGELVKHEDGSYRLKNDDGTRIEHLTGANNGDNNGEYWKVTTPDGTQYFFGRNRLPGWS SGDPETRSAWTVPVYGNNSGEPCHGSTFADSWCQQAHKWNLDYVVDVHGNVVTYWYEKER NHYGRNAQTAPTPYDRGGYLKRIDYGLRSDDVYATAPARVSFTVSERCIPTDTFNCAPSK LTPTNASHWPDVPFDQNCDAGTQCTGQFSPTFWTRKKLDKITTQIHNGTSYTDVDSWTLE HAFPAPGDGTTPSLWLKSITHTGHVGGTVTMPKVTFEGTALENRVDGLADGLAPMLKYRI TSIYTESGGQIDVSYSAPECTRGSTPQPHANTKRCYPVRWTPEGEPEMVDWFHKYVVTQI AEFDLVADQPEVVTTYEYLGGAAWRYVEANGLIKDKYRTWSDWRGYERVRMRTGHPDGVR SETEYLYFRGMHGDKQPSGTRSVTVTDSTGGTHTDHNELAGTLREEILRNGVDGEVVTRT ITDPWRKKTAENVHPWATVRAYMLGVSATHTYTSLGGGQWLQTRVENTMDDHGAVVEVND LGDVTDPADDECVRTDYVRNTGIWLMNLISRSETVNVNCDTTPSRPDNVISDERIHYDGL AFGATPVKGSPTKTEKIDSYDNGQPVYQRVDLTTFDAYGREHTVTDPAGNTTTTTHTHNA AGLLVSTAETNPLGHVSTTEFDPARGLPVAEIDPNGRRIDLAYDPLGRLTSVWLPDRNKA TTTPTATFEYLVHKDQPTVIVSNTIRNDGQYTTTYEIFDGLMRPRQTQGPAVGGGRLITD TFHDSRGLVVKEREPYFNNNDPSGTLLVVNNDDDIPRQTETVYDGAERPTDVLHVSRGEE QWRTTTEYRGDRTLITPPEGGIATTTIVDARGRTVELREHHGPTPDSAYDALTYTYAKHG GVATVTDVEGNVWETVYDLRGRKVASTDPDTGTTTYTYNDLDQLVSTTDARGETLAYTYD ALGRKTGLFDDSPQGTQRAAWIYDTKAKGYLTSSTRYIDGHAYTTEVLAYDQMNRVVAST VKIPAVEGVLAGTYRYGYRYNADGTLRSVDYPAGGTLGRETVIYSYNELGMPVRVEGFGD DVYVDETVYSRTGNLLRRTFDLGGSGSDVTWATRGYDLATDRLVSSSVVHQVGSGSLLEQ SYTYDDAGNVLSISDAPTAYGLPGDTQCFAYDHLRRLTEVWTPDTHGTTACDAAPDVDDL GGASPYWHSYTYDAVGNRETEVRHSASGDTVRTYTTPTAGQSQPHTLTQVEQTGPTGTRL EQYTYDASGNMTGRTTASRDQDLEWDAEGRLVEVTEEDGSTTSFRYDADGQRLIRDTPTE AVLYLAGMEVRLDKTVPSVEATRFYEHAGETVAVRTGDGSVHWTFSDHQATGQLAVHALT GQTVRRRTTAFGTDRGSTGTWPTDKGFVSGTVDESTGLVQLGARAYDANIGRFISADPII DFVDSQQMHGYAYANNSPITFSDSDGLMVKGPGKKQVSASTGGRRIRHNLRGAARKAAHQ AYNRYHGISTGTPRGGGSSAVPSSSSSSHDEAREELAAAATGLAKIVADELGISAGIECL TTGDIGACGETALNVAMALFAPGGVLAKLAVKYALRWGKFASLVSKVKKLGGEIISAVNT LMKKDSGNAVSAAACPVRGPNSFVSGTRVLMADGTSKPIEKVKTGDQVLATDPETGEQGP RTVLATIVGTGAKTLVEITVDATTEKPADDDSDREGTPGPTAAGDVILATDEHPFWVPEL GQWVDAIDLTPGMWLQTSAGTWVQITAIQAWTQAATVHNLTVQDQHTYYALAGATPVLNH NCSWTSQANLDNHYRKHGEEMGFETQIEYQSAAEDLMCDCDGLRSGVRTRTVDGTTYYLD EESGEFGVKSERGIVTYYNAGENAVSYFERQGGFEVGR NT seq 5877 nt NT seq  +upstreamnt  +downstreamnt gtggacggacgcaccgcctcctccaacaaccagacctcctggatcggcgagggcttcagc tacgccgccggcgcgatcgaacgcagctacaccgcctgctccgacgacggccagacggct cccaacaccactggcgacctgtgctggaagaccgacaacgcgacactgtcgatgcagggc cacgccggtgagctggtcaagcacgaagacggcagctaccggctcaaaaacgacgacggc acccggatcgagcacctgaccggcgcgaacaacggcgacaacaacggcgagtactggaag gtcaccacccctgacggcacccagtacttcttcggccgcaaccggctgcccggctggtcc tccggtgatcccgagaccaggtcggcgtggaccgtgcccgtctacggcaacaactccggc gagccctgccacggctccaccttcgccgactcctggtgccagcaggcccacaaatggaac ctcgactacgtggtggacgtgcacggcaacgtcgtcacctactggtacgagaaggaacgc aaccactacggtcgcaacgcccagaccgccccgaccccctacgaccggggcggctacctc aagcgcatcgactacggtctgcgctccgacgacgtctacgccaccgcccccgcccgggtg agcttcaccgtcagcgagcgctgcatccccaccgacaccttcaactgcgccccctccaag ctcaccccgaccaacgcctcccactggcctgatgtgcccttcgaccagaactgcgacgcc ggaacccagtgcaccggccagttctcaccgaccttctggacccgcaagaaactcgacaag atcaccacccagatccacaacggcacctcctacaccgacgtggactcctggaccctggag cacgccttccccgcccccggcgacggcaccacaccatcactgtggctgaagtccatcacc cacaccggccacgtcggcggcaccgtcaccatgcccaaggtgacgttcgagggcaccgcg ctggagaaccgggtcgacgggctggccgacggcctggcaccgatgctcaaataccgcatc acctcgatctacaccgagtccggcggccagatcgacgtctcctactccgcacccgagtgc acccgcggctccaccccgcagccgcacgccaacaccaagcgctgctacccggtccggtgg actcccgagggcgagccggagatggtcgactggttccacaagtacgtcgtcacccagatc gccgagttcgacctggtcgccgaccagcccgaggtggtcaccacctacgagtacctgggc ggcgcggcctggcgctacgtcgaggccaacgggctgatcaaggacaagtaccgcacctgg tcggactggcgcggctacgagcgggtccgaatgcgcaccggacaccccgacggggtgcgc tccgagaccgagtacctgtacttccgcggcatgcacggcgacaagcagccctccggcacc cgctcggtcaccgtcaccgactcgacaggcggcacccacaccgaccacaacgaactcgcc ggaacactgcgcgaggagatcctccgcaacggcgtcgacggcgaggtggtcaccagaacc atcaccgacccgtggcgcaagaagaccgccgagaacgtccacccgtgggcgacagtgcgc gcctacatgctcggagtctcagccacccacacctacaccagcctgggcggcgggcagtgg ctccagacccgtgtcgagaacacgatggacgaccacggggccgtggtggaggtcaacgac ctcggcgacgtcaccgatcccgccgacgacgagtgcgtccgcaccgactacgtgcgcaac accggcatctggctgatgaacctgatctcccgctcggagacggtcaacgtcaactgtgac accacgccgtcgcgacccgacaacgtcatcagcgacgaacgcatccactacgacggcctg gccttcggcgccaccccggtcaagggcagccccaccaagaccgagaagatcgactcctac gacaacggccagcccgtctaccagcgggtcgacctgaccacctttgatgcctacgggcgc gagcacaccgtcaccgacccggcgggcaacaccaccacgaccacccacacccacaacgcc gccgggctgctcgtctccacggccgaaaccaacccgctcggccacgtctcgaccaccgag ttcgaccccgcccgagggctgccggtcgcggagatcgaccccaacggccgccgcatcgac ctggcctacgatccgctgggacgcctcacttcggtgtggctgcccgaccggaacaaggcc accacgacaccgaccgccaccttcgagtacctggtccacaaggaccagcccacggtgatc gtcagcaacaccattcgcaacgacggccagtacaccaccacctacgagatcttcgacggg ctgatgcgcccgcgccagacccagggccctgcggtgggcggcgggcggctgatcaccgac accttccacgactcccgcggcctggtcgtcaaggaacgcgaaccctacttcaacaacaac gacccctccggcacgctgctggtcgtcaacaacgacgacgacatcccccgccagaccgag accgtctacgacggcgcggaacggcccaccgacgtcctccacgtctcgcgtggtgaggag cagtggcgcaccaccaccgagtaccggggcgaccggaccctcatcactccgcctgagggc ggcatcgcgaccacgaccatcgtggacgcgcgggggcgcaccgtggaactgcgtgagcac cacggccccacccccgacagcgcctacgacgccctcacctacacctacgccaaacacggc ggagtggccacggtgaccgacgtcgagggcaatgtgtgggagaccgtctacgacctgcgc ggccgcaaggtcgcaagcaccgaccccgacaccgggaccaccacctacacctacaacgac ctcgaccagttggtgtccaccactgatgcgcgcggtgagacgctggcctacacctacgac gcgctcggccgcaagaccggcctgttcgacgactccccgcagggtacccagcgcgccgcg tggatctacgacaccaaggccaagggatacctgacctcgtccacccgttacatcgacggc cacgcctacaccaccgaggtactggcctacgaccagatgaaccgggtcgtggccagcacg gtcaagatcccggcggtcgagggggtcctggccggaacctaccgctatggctacaggtac aacgccgatggaaccctgcgcagcgtggattacccggcgggaggcacgctgggtcgggag acggtcatctactcctacaacgagctcggcatgccggtgcgggtcgagggtttcggcgac gacgtctacgttgatgagactgtctactcccggaccggcaacctgctgcggcgcacgttc gacctgggcggctccgggtcggacgtgacctgggccacccggggctacgaccttgccacc gaccggctggtgtcgagcagcgtggtgcaccaggtcggttccggatcgctgctggagcag agctacacctacgacgacgcgggcaacgtgctgagcatcagcgacgccccgaccgcctac gggctgcccggcgacacccagtgctttgcctatgaccacctgcgccgcctcaccgaggtg tggactcccgacacccacggcacgaccgcgtgcgacgcggccccggacgtcgacgacctc ggcggcgcctccccctactggcactcctacacctacgacgcggtgggcaaccgcgagacc gaggtacgccactccgccagcggcgacacggtccgcacctacaccacccccaccgccggc cagtcccaaccgcacaccctcacccaggtcgaacagaccggccccaccggcacccggttg gagcagtacacctacgacgcctccggcaacatgaccggccgcaccaccgcctcccgcgac caggacctggagtgggacgccgagggcagactggtcgaggtcaccgaggaggacggctcc accacgtcgttccgctacgacgccgacggccagcggctgatccgcgacacccccaccgag gcggtgctgtacctggcgggcatggaggtccggctggacaagaccgtgccttcggtggaa gccacccgcttctatgagcacgcgggcgagaccgtggcggtgcgcaccggtgacggctcg gtgcactggacgttctccgaccaccaggccaccgggcagttggcggtgcacgccctcacc ggccagaccgtgcgccgccgcaccaccgcgttcggcaccgaccggggcagcaccggcacc tggcccaccgacaagggcttcgtcagcggcaccgtcgacgagtcaaccggcctggtccag ttgggggcgcgcgcctacgacgccaacattggccgtttcatctcggcggacccgatcatc gacttcgtcgactcccaacagatgcacggctacgcctacgccaacaacagccccatcacc ttctccgactccgacgggctgatggtcaaggggccaggaaagaaacaggtcagcgcgagc acaggtggaaggcgaatcaggcacaacctgagaggtgctgcccgaaaagccgctcaccag gcgtacaaccgctaccacggaatcagtacgggaacgcctcggggtggtggttcctctgcg gttccctcgtcttcgtcgagtagtcatgacgaggcccgggaggagttggcggcggccgcg acagggttggccaagatcgtcgcggacgagttgggcatcagtgcgggcatcgagtgtctg accacgggcgatatcggggcgtgtggtgagacggcgctgaacgtggcgatggcgttgttc gcgccgggcggggtgctggccaagctggcggtcaagtacgcgctgcgctggggcaagttc gccagcctggtctccaaggtcaagaagctgggcggcgagatcatctcggcggtcaacacg ctgatgaagaaggactcgggcaacgcggtgtcggctgcggcgtgtccggtgagagggccc aacagttttgtttccggtacccgggtgttgatggctgatggcacgtccaaaccgatcgag aaggtcaagaccggcgaccaggtactggccaccgatcccgagaccggtgaacagggtccc aggacggtgctggccaccatcgtcggcacgggagccaagaccctggtcgagatcaccgtg gacgccaccaccgaaaaacccgcggacgacgacagcgaccgggaaggaacacccggaccg accgcggccggcgacgtcattctcgcaaccgacgaacaccccttctgggtccccgaactc ggccagtgggttgatgccatcgacctgacccccgggatgtggctgcagacctcagcagga acctgggtccagatcaccgccatccaggcatggacccaagccgccaccgtccacaacctc accgtccaggaccagcacacgtactatgcgctggcaggggccacgcctgtacttaaccac aattgcagctggaccagtcaggcgaatttggacaaccactacagaaaacatggggaagag atggggtttgagacgcagattgaataccagagcgccgcagaagacttgatgtgtgactgt gatgggcttaggtctggagttcggacgaggaccgtcgatggtacgacttactacctcgat gaagaaagtggggaatttggcgtcaagagcgaaagggggatcgttacctattataatgca ggagaaaatgcggtttcgtattttgagaggcaggggggattcgaggtcggtagatga

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