Thermobifida halotolerans: NI17_013535
Help
Entry
NI17_013535 CDS
T08032
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI17_013535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thao03019
]
NI17_013535
03009 Ribosome biogenesis [BR:
thao03009
]
NI17_013535
Enzymes [BR:
thao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NI17_013535
Messenger RNA biogenesis [BR:
thao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NI17_013535
Ribosome biogenesis [BR:
thao03009
]
Prokaryotic type
rRNA processing factors
NI17_013535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Imm51
Motif
Other DBs
NCBI-ProteinID:
UOE17895
UniProt:
A0A399G0S8
LinkDB
All DBs
Position
complement(3038129..3040882)
Genome browser
AA seq
917 aa
AA seq
DB search
MLENEPSNGAGGTEGTTETETTARPNGSAPAGMSSTVRPAAPVRRGRAASRPAGPPPEPE
PAPASTPTTVAASSVELVPADPVPQGAEPASEEAAEEPKRRSRKTATRSPRTRTRRTGTA
GADGAEPDHRDAPSEPETAEVGASQDTGAAEPAEPPAVAAVTFQPPMVLFQPPVVEENQT
ADDSGAATEDAEETPESDAEDSAEDRSTRRRRRRGGRRSRRNGDDTETAEATAADASTTS
DDADDRAGTTTETATAEQAETGGADSSEQDDSAEEAEATGTSRRRRRRRRRSGTEVAAEP
EPDDPPNTVVRVRPARTERPIENEVQAVRGSTRLEAKRQRRREGREQGRRRPPIITESEF
LARRESVKRDLVVRRTGERTQIAVLEDNVLVEHYVDRADHKSYVGNVYLGRVQNVLPSME
AAFVDIGKGRNAVLYAGEVNWDATGLEGQPRRIESVLKSGQSVLVQVTKDPLGHKGARLT
SQISLPGRYLVYVPDGSMTGISRKLPDKERARLKQILKKVMPTGAGVIVRTAAEGASEEE
LERDISRLAKQWEAIKRKAKSATAPALLNSEPDLTTRVVRDIFNEDFSSLVVSGGDAWET
IRDYVDHVAPHLADRLSHWTEDRDVFEAYRIDEQIAKALERKVWLPSGGSLIIDRTEAMT
VIDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV
LRRMLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSHTCEQCSGRGLVLHTDLV
ETRSNGNGGRKKKNKNGSDKASDKSSDRAAAAEKAQSAPEVEAAPQTEPAAQEPKKSSRT
TRRAKRAAGPPPEAEGQGPDETGPEAPAAVQVASVPAAEADDGQAADSDAVTERPRRRRT
RRKASVAAPETAVAEAG
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccagcaacggtgccggaggcaccgaggggacaactgaaacagag
acaaccgccaggccgaacggatcggcccccgcaggcatgtccagcaccgtgcgcccggcc
gcgccggtgcgccgtggccgtgccgcgagccgacccgccggaccgccgcccgaaccagag
ccggcaccggcgtcgacacccacgaccgtggccgcctcctccgtggaactggtgcccgca
gacccggtcccgcagggagcggaaccggcctccgaggaggccgcggaggagccgaagcgg
cgcagccgcaagaccgcgacccggagcccgcggacgcgcacccgcaggaccggcacggcc
ggggccgacggcgccgagccggaccaccgggacgcgccgagcgagcccgagacggccgag
gtaggcgcttcgcaggacaccggcgcggcggaaccggccgaaccccccgccgtggccgcg
gtcaccttccagccgcccatggtgctcttccaaccccccgtggtggaggagaaccagacg
gccgacgactccggcgccgcgacggaggatgccgaggagacacccgaatccgacgccgag
gactccgcggaggatcggtccacccgccgccgccgtcgcaggggcggacggcgcagcagg
cgcaacggcgacgacaccgagaccgcggaggccacggccgccgacgcctccaccacctcc
gacgacgccgacgaccgcgccgggaccaccaccgagaccgcgaccgccgagcaggccgag
accggcggtgccgacagctccgagcaggacgactccgccgaggaggccgaggccacgggc
accagccgtcgccgccgccgtcgccgccgccgctcgggaacggaggtcgcggccgaaccc
gaacccgacgacccgcccaacacggtggtccgggtgcgtcccgcccgcaccgaacgcccg
atcgagaacgaggtgcaggccgtccgcggctccacccgcctggaggccaagcggcagcgc
cgccgcgagggccgcgagcagggacgccgccgccccccgatcatcaccgagagcgagttc
ctggcccgccgcgagtccgtcaagcgcgacctggtggtccgccgcaccggtgagcgcacc
cagatcgccgtgctcgaggacaacgtgctcgtcgagcactacgtcgaccgcgccgaccac
aagtcctacgtcggcaacgtctacctggggcgggtgcagaacgtcctgccctcgatggag
gcggccttcgtcgacatcggcaagggacgcaacgccgtcctgtacgcgggcgaggtcaac
tgggacgccaccggactggagggccagccccgccggatcgagtcggtgctcaagtccggc
cagtccgtcctggtccaggtcaccaaggatccgctcggccacaagggcgcccgcctgacc
agccagatcagcctccccggccgctacctggtgtacgtgcccgacggctccatgaccggg
atcagccgcaagctccccgacaaggagcgggcccgcctcaagcagatcctcaagaaggtc
atgcccaccggcgccggggtgatcgtgcgcaccgcggccgagggggccagcgaggaggag
ttggagcgcgacatctcccgcctggccaagcagtgggaggccatcaagcgcaaggcgaag
tcggccaccgccccggcactgctcaacagcgagcccgacctcaccacccgcgtggtccgc
gacatcttcaacgaggacttctccagcctcgtcgtctccggcggcgacgcctgggagacc
atacgcgactacgtcgaccacgtcgccccccacctggccgaccgcctgtcgcactggacc
gaggaccgcgacgtcttcgaggcctaccggatcgacgagcagatcgccaaggcgctggaa
cgcaaggtgtggctgcccagcggcggctccctgatcatcgaccgcaccgaggcgatgacc
gtcatcgacgtcaacaccggcaagttcaccggtcagggcggaaacctcgaggagacggtc
accaagaacaacctcgaggcggccgaggagatcgtgcggcagctgcggctgcgcgacatc
ggcggcatcatcgtgatcgacttcatcgacatggtgctggagagcaaccgggacctggtc
ctgcgccgcatgctggagtgcctgtcccgggaccgcaccaagcaccaggtggccgaggtc
acctcgctgggactggtgcagatgacccgcaagcgggtcggccaggggctgctggaggcc
ttctcgcacacctgcgagcagtgcagcggccgcggcctggtcctgcacaccgacctcgtc
gagaccaggtccaacggcaacggcggacgcaagaagaagaacaagaacggctcggacaag
gcttcggacaagtcctcggacagggcggctgcggcggagaaggcgcagtccgcaccggag
gtcgaggccgctccgcagaccgagcccgccgcgcaggagcccaagaagtcgagccgcacc
acccggcgggccaagcgcgccgcgggaccaccgccggaggcggaggggcagggccccgac
gagacgggacccgaagcgcccgccgccgtgcaggtggcgtccgttccggcggccgaggcc
gacgacggccaggcggccgactccgacgccgtcaccgaacggccccgccgccgccggacc
cggcgcaaggcgagcgtggccgcccccgagacggcggtggccgaggccggatga
DBGET
integrated database retrieval system
