Thermobifida halotolerans: NI17_021890
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Entry
NI17_021890 CDS
T08032
Name
(GenBank) HAMP domain-containing protein
Organism
thao
Thermobifida halotolerans
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP_2
HAMP
HATPase_c
Response_reg
GAF_2
HisKA
GAF
Laminin_II
ATG17_like
WXG100
OmpH
OKR_DC_1_N
YscO-like
Motif
Other DBs
NCBI-ProteinID:
UOE19350
UniProt:
A0A399FYP9
LinkDB
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Position
complement(4926665..4930906)
Genome browser
AA seq
1413 aa
AA seq
DB search
MPRMKSRTVSEDELDMLLDALYKMRDGNFAVRLTPHGRGRYGEIARVLNEVLDHCEQLSD
ELQRASRVVSSDGRLSERISISPARGAWGKSVRALNQMLDEVSEPVTSVARILDSVANGD
LSQRVDLSSRHGELHGDLLRLASSVNRMADQMSAFTDEVTRVAREVGTEGKLGGRANVKG
VSGIWKDLTDNVNSMADNLTNQVRDISQVTTAVVAGDLTKKVTVDVQGEMLQLKDTVNTM
VDQLSTFADEVTRVAREVGTEGKLGGRANVKGVSGIWKDLTDNVNSMADNLTNQVRDISQ
VTTAVARGDLTKKVTVDVQGEMLQLKDTVNTMVDQLDSFADEVTRVAREVGTEGKLGGRA
NVKGVSGIWKDLTDNVNSMANSLTHQVRNISQVTSAVAAGDLTKKITVDAQGEMLELKDT
VNTMVDQLSAFADEVTRMAREVGTEGKLGGQAHVSGVSGVWKDLTDNVNSMANNLTHQVR
QISVVTTAVARGDLTKKVTVNAKGEILELKDTINTMVDQLDSFADEVTRVAREVGTEGKL
GGRANVKGVSGIWKDLTDNVNSMSHNLTTQVRNISQVTTAVARGDLTKKITVDAQGEMLE
LKDTINTMVDQLSTFALEVTRVGYEVGSEGKLGVQAKVAGVSGVWKELTDTVNELAKNLT
TQVRAIASVASAVARGDLTQSIQVSARGELATLKDNVNLMVSNLRETTAAQRDEDWLKSN
LARLSGLIQGHRDLNDLARLIMTEVTPLVDAQHGACFLPEDENDTETFRLYAGYGYQPSE
QRRRITVGQGLAGESIAQRKEMIVHNVPGNYVRIESGLGEAPPLSIAVFPILSEDRVLGV
IELGSYGEFREIHLNFLRQLVSLISATITTILANSKTEYLLAQSQQLTTALQERSNELQR
QQEELRRKNAELHSKAGQLASQNRAIELQNRQIERARRSLEDRAHQLQVSSKYKSEFLAN
MSHELRTPLNSLLILARLLADNSEQNLTPKQVEFAQTIHKAGSDLLQLIDEILDLSKVEA
GRMELSPSNVSISQLVDYVEASFRPMASDKGLAFAVEVSPDIPDHLWTDEQRLQQVLRNL
LSNAVKFTSTGEVRLLIEPAWALEDADLDMFADTDEVIAFSVTDTGIGIPEDKLQLIFEA
FHQGDGGTSRRFGGTGLGLSISRNMAELLGGEIRVNSVLGEGSTFTLLLPVRLPEGTTER
MYQSLNGTDVFAPIDSPSDLVPLPDGQAAPQTAPESEPLSLEAPDEPEPVPVLTAGSSVA
SPSDDADEAQRETAADDVLAGRRVLIVDDDIRNVFALASALEAHGLEVLYADNGHEGIEK
LEANEDIALVLMDIMMPELDGNATTRAIREMPQFADLPIISLTAKAMQGDRERSLEAGAS
DYVTKPVDLDHLLDVMRQWLDQDNDDTETSREQ
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggatgaagagtcggaccgtgtcggaggacgaactggacatgctcctcgacgcg
ctctacaagatgcgcgacgggaatttcgcggtccgcctcacccctcacggccggggcagg
tacggagagatcgcgcgggtcctgaacgaggtgctggaccactgcgagcagttgagcgac
gaactgcagcgggccagcagggtggtcagctccgacgggcggctctccgagcgcatctcg
atcagtccggcccggggcgcctggggcaagagcgtgcgcgcgctcaaccagatgctcgac
gaggtcagcgaaccggtgacctcggtggcgcggattctggactcggtggccaacggtgac
ctctcccagcgggtcgacctgtccagccggcacggggaactccacggcgacctgctgcga
ctggcgtcctcggtgaaccggatggccgaccagatgtcggcgttcaccgacgaggtgacg
cgggtggcgcgcgaggtcggcaccgagggcaagctcggcggacgcgccaacgtcaagggc
gtctccggcatctggaaggacctcaccgacaacgtcaactccatggccgacaacctcacc
aaccaggtgcgggacatctcacaggtcaccacggccgtggtggcgggcgacctcaccaag
aaggtcaccgtggacgtccagggcgagatgctccagctcaaggacaccgtcaacacgatg
gtcgaccagctctccacgttcgccgacgaggtgacgcgggtggcgcgcgaggtcggcacc
gagggcaaactcggcggacgcgccaacgtcaagggcgtctccggcatctggaaggacctc
accgacaacgtcaactccatggccgacaacctcaccaaccaggtgcgggacatctcacag
gtcaccacggccgtggcgcgcggcgacctcaccaagaaggtcaccgtggacgtccagggc
gagatgctccagctcaaggacaccgtcaacacgatggtcgaccagttggactccttcgcc
gacgaggtgacgcgggtggcgcgcgaggtcggcaccgagggcaagctcggcggacgcgcc
aacgtcaagggcgtctccggcatctggaaggacctcaccgacaacgtcaactccatggcc
aacagcctgacccaccaggtgcgcaacatctcccaggtgacgtcggcggtggcggcgggc
gacctcacgaagaagatcaccgtggacgcccagggcgagatgctggagctgaaggacacc
gtcaacacgatggtcgaccagctctccgcgttcgccgacgaggtcacccgcatggcgcgc
gaggtcggcaccgagggcaagctcggcggtcaggcgcacgtgagcggggtgtcgggagtg
tggaaggacctcaccgacaacgtcaactccatggccaacaacctgacccaccaggtgcgg
cagatctccgtggtgaccacggcggtggcgcgcggcgacctgacgaagaaggtcacggtg
aacgccaagggcgagatcctggagctgaaggacaccatcaacacgatggtggaccaactg
gactccttcgccgacgaggtgacgcgggtggcgcgcgaggtcggcaccgagggcaagctc
ggcggacgcgccaacgtcaagggcgtctccggcatctggaaggacctcaccgacaacgtc
aactcgatgtcgcacaacctcaccacgcaggtgcgcaacatctcccaggtcaccacggcc
gtggcgcgcggcgacctcaccaagaagatcaccgtggacgcccagggcgagatgctggag
ctgaaggacaccatcaacacgatggtcgaccagctctccacgttcgcgctggaggtcacc
cgcgtcggctacgaggtgggcagcgagggcaagctcggtgtgcaggccaaggtggccggg
gtgtcgggcgtgtggaaggagctcaccgacaccgtcaacgaactggccaagaacctcacc
acgcaggtgcgcgcgatcgcgtcggtggccagcgcggtggcccgcggcgacctgacgcag
tccatccaggtgagcgcgcgcggcgagctggccacgctgaaggacaacgtcaacctgatg
gtgtccaacctgcgggagaccaccgcggcgcagcgcgacgaggactggctgaagagcaac
ctggcgcgcctgtccggtctcatccagggccaccgcgacctcaacgacctggcccgcctc
atcatgaccgaggtgaccccgctggtggacgcccagcacggcgcctgcttcctgcccgag
gacgagaacgacaccgagaccttccggctctacgcggggtacggctaccagcccagcgag
cagcgccgccgcatcaccgtgggccagggcctggccggggagtccatcgcgcagcgcaag
gagatgatcgtccacaacgttcccggcaactacgtgcgcatcgagtcggggctgggcgag
gctccgccgctgagcatcgcggtcttcccgatcctgtcggaggaccgggtgctcggcgtg
atcgagctgggctcctacggcgagttccgggagatccacctcaacttcctgcgccaactg
gtcagtctcatcagcgccacgatcaccacgatcctcgccaactccaagaccgagtacctg
ctggcccagtcccagcagttgaccaccgcgctgcaggagcgctccaacgagctgcagcgg
caacaggaggagctgcgccgcaagaacgccgaactgcacagcaaggcggggcagctggcg
agccagaaccgcgccatcgagctgcagaaccggcagatcgaacgggcccggcggtcgctg
gaggaccgggcgcaccagctccaggtgtcctccaagtacaagtcggagttcctggcgaac
atgtcgcacgagctgcgcaccccgctcaacagcctgctgatcctggcgcggctgctggcc
gacaacagcgagcagaacctcacccccaagcaggtggagttcgcccagacgatccacaag
gccggaagcgacctgctgcagctcatcgacgagatcctggacctgtcgaaggtcgaggcg
ggacggatggagctgagccccagcaacgtgtccatcagtcagctggtggactacgtcgag
gcgtcgttccgtccgatggccagcgacaaggggctggcgttcgcggtcgaggtgtccccg
gacatcccggaccacctgtggaccgacgagcagcggctccagcaggtgctgcgcaacctg
ctgtccaacgcggtgaagttcaccagcaccggtgaggtgcggctgctgatcgaaccggcg
tgggcgctggaggacgccgacctcgacatgttcgccgacaccgacgaggtcatcgcgttc
tcggtgaccgacaccgggatcggcatccccgaggacaagctccagttgatcttcgaggcg
ttccaccagggcgacggcggtaccagtcggcggttcggcggaaccggtctggggctgtcc
atcagccggaacatggccgagctgctcggcggtgagatccgggtgaacagtgtgctcggg
gagggcagcacgttcacgctgctgctgccggtgcggctgccggagggcaccacggagcgg
atgtaccagtcgctgaacggcaccgacgtgttcgctccgatcgactccccctccgacctg
gttccgctgcccgacgggcaggcggcgccgcagacggcccccgagagcgagccgctctcc
ctggaggcgcccgacgagccggaaccggtgccggtgctcaccgccgggagttcggtggcg
tcgccctcggacgacgcggacgaggcgcagcgggagaccgcggcggacgacgtcctggcg
ggcaggcgggtcctgatcgtcgacgacgacatccgcaacgtcttcgcgctggccagcgcg
ttggaggcgcacggcctggaggtgctctacgccgacaacggccacgagggcatcgagaag
ctggaggccaacgaggacatcgcgctcgtgctgatggacatcatgatgccggaactcgac
ggcaacgccaccacgcgcgccatccgggagatgccgcagttcgcggacctgccgatcatc
tccctcaccgccaaggccatgcagggcgaccgggaacgcagtctggaggcgggcgcgtcg
gactacgtgaccaaaccggtggacctcgaccacctgctggatgtcatgcgtcagtggttg
gatcaggacaacgacgacaccgaaacgagccgggagcagtga
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