Thalassotalea sp. PS06: FNC98_04570
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Entry
FNC98_04570 CDS
T06100
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thap
Thalassotalea sp. PS06
Pathway
thap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNC98_04570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thap03019
]
FNC98_04570
Enzymes [BR:
thap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNC98_04570
Messenger RNA biogenesis [BR:
thap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNC98_04570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDP00687
UniProt:
A0A516HA97
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All DBs
Position
complement(1047509..1048888)
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AA seq
459 aa
AA seq
DB search
MSFDTLGLSPTIIANLQRQNYQKPTPIQEQAIPAVLSGQDVMAAAQTGTGKTAGFTLPIL
ERLAKGERVKSNHIRALILTPTRELAAQVGDSVQTYSEGLSLSSAVVFGGVKINPQMMRL
RKGVDILVATPGRLLDLHQQNAVKFSQVEVLVLDEADRMLDMGFIRDINKILDLLPKKRQ
NLLFSATFSEDIKALAKKLVRNPVEISVNPANATAVTVEQWVYPTDKNKKPKLLSYLIGH
HNWQQVLIFCKTKHGANRLTRHLEADGISALAIHGNKSQGARTKALAQFKEGKIRALVAT
DIAARGLDIDQLPQVVNFELPHVAEDYVHRIGRTGRAGSTGQAISLVCADEFKLLVAIER
LSQKLIPRQEIEGFEASNPVPKSHDVRPFKAKKPKKPKTPKVEHQDGQRSGEVAQGHKPP
AKKRPTRSDNPYAKNTSNRRRGKPTGGNRGKPIGKSLNK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgacacgctgggtttgagcccaacgattatcgctaacctgcaacgccagaat
taccaaaaacctaccccaatacaagaacaggctatccctgctgtgctaagtggtcaggat
gtcatggctgcggcacaaaccggtacaggaaaaaccgcagggtttaccctgccgatatta
gaacgtctggcaaaaggagaaagggttaaaagcaaccacatccgtgccttaatactcacc
ccgacccgtgagctggcagcgcaagttggtgacagcgtgcaaacctatagcgaaggtcta
agtttatcatcggccgttgttttcggtggcgtaaaaattaacccacaaatgatgcgcctt
cgaaaaggcgtagacattttagtggcgacacctggacgcttgttagatttacaccagcaa
aatgcggttaaattttctcaggttgaagttctggtgcttgatgaagcggatcggatgctg
gacatgggctttatccgggacatcaataagatcctcgatttactgccgaagaaacgtcag
aacctgttattttctgccaccttctcagaggacatcaaagctctggccaaaaagctggtg
cgaaacccggtggaaatttccgtaaatccggcgaatgccacagcagtgacggttgaacaa
tgggtttatccaaccgataaaaacaaaaagccgaaattgctttcctatttgattggtcat
cacaattggcagcaagtgctgatcttctgtaaaaccaaacatggtgctaaccgtttaact
cgccatttggaagctgatggcatcagtgccttagccattcacggtaataagagtcagggc
gcgagaaccaaagcgttggcacagtttaaagaaggcaaaatccgcgcacttgttgccacc
gatattgccgcccgcggtcttgacatcgaccagttaccacaagtggtgaactttgagcta
ccgcatgtggctgaagattatgtacaccgaatcggccgcaccggtcgtgccggtagcact
ggccaggcaatttccctggtttgcgccgatgagtttaagctgttggtagcgattgaacgt
ttaagtcaaaagttgatccctcgacaggagattgaaggctttgaagcatcaaacccagtg
ccgaaatctcatgatgtacgtccatttaaggcgaaaaaaccgaagaagccgaaaacgcca
aaagttgagcatcaagatgggcaacgcagcggcgaggtagctcaaggccataaacctcct
gcgaaaaaacgaccaactcgcagcgataacccttacgcgaagaatacatctaatcgccgt
cgtggtaagccgacaggcggtaatcgagggaaaccgataggcaaatcactaaacaaatag
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