Thalassotalea sp. PS06: FNC98_07120
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Entry
FNC98_07120 CDS
T06100
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thap
Thalassotalea sp. PS06
Pathway
thap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNC98_07120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thap03019
]
FNC98_07120
03009 Ribosome biogenesis [BR:
thap03009
]
FNC98_07120
Enzymes [BR:
thap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FNC98_07120
Messenger RNA biogenesis [BR:
thap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FNC98_07120
Ribosome biogenesis [BR:
thap03009
]
Prokaryotic type
rRNA processing factors
FNC98_07120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
SelK_SelG
zf-C2HC
Motif
Other DBs
NCBI-ProteinID:
QDP01126
UniProt:
A0A516HBL5
LinkDB
All DBs
Position
complement(1609952..1613011)
Genome browser
AA seq
1019 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQSLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPMKEIAKSYFPQGYSFQGRPNIKDVLSEGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPKGMGLIVRTAGVGKDYEEL
AHDLNVLLHYWRSIENVASSKPAPFLIHQESNVILRAIRDYLRRDIGEIVIDRPKTYDNI
KEHIQLVRPDFINKVKLYKGDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMREAVRSDRARIQLSRISRFGLLEMSRQRLRPSIGETSQGTCPRCNGTGHVRGVESLAL
SVLRLMEEEAIKDKTSQVHAQVPVPVGTYLLNEKRNAVGHIEKRHNVKVLILPNQNMDTP
QYEVIRVRDDETTFEASYEMKVAEPVAEEAVMPKFQKDAVKRDEPVLQGMTAPKAAPTQK
KVVEDKKPQRSTGIFAAIAAFFASLFGSEEKPKPKGKQQHRKGSGQDQRDRRQRKPRQQQ
RRNRNQDKRDTNRDTSKDNKVADKEQNKSPNRNAKKPAKRPAEKQEKVVKEEKIAERRQR
RNTRKKVRINDNKIEQSQVAQEEQKQESKPAKEKTVRGNRKPRSKKPTTDEAALTNTTEE
NVVTEAEPIETEGKRDKEGKNRTRRSPRHLRSHGQRRRKDKEQTAETENSVEADAEAKSK
VTENVVDDAVVARYPSVAEGEDAVQTSLDLSDDNEAPVKQPDTAAVVETAEDTPVKVENN
SQLELEVTAEEPTKAVNEPEVETVEGKANTLVSEDSAEEESKAVAKAEIVNEEPVVEETV
VEETISPVPAADSAEEQTEEAIVADETSTEEPETEVEVAAGEGQSETVIEKPAIAAKLRQ
LSGKANAPMTKPEAIAVDTNIELPTSALQTNERADFIRSEKVAAQASATNHSSAGPTKP
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttaattaatgctactcagtcagaagaactgcgagtagcactcgttgac
ggccaaagcctttatgatcttgatatcgaaagtcctggccacgaacaaaaaaaagccaac
atttataagggtaaaattacccgagtagaaccctccctagaagccgcatttgtcgattat
ggtgccgagcgccacggtttccttcccatgaaagagattgccaaaagctattttccacaa
ggatatagtttccagggccgtccaaatatcaaagatgttttaagtgaaggacaagaagta
attgtacaaatcgataaagaagaacgaggccagaaaggcgctgcgttaactacctttatc
agtcttgccggaagctacctggtgttgatgccaaacaaccctcgtgcaggcggtatttcc
cgtcgtatcgaaggtgatgagcgcaccgaattaaaagaatcattaagcaaactagacctg
cccaaaggcatgggtttaattgttcgcaccgcaggtgttggcaaagattatgaagagctt
gctcacgatttaaatgtcttgttgcactactggcgctctatcgaaaacgtggcaagttca
aaacctgcgccgtttttaattcaccaggaaagtaatgtcattttacgcgctatccgcgat
tacctgcgccgcgacattggtgagatcgttatcgatcgtccgaaaacttatgacaacatc
aaagaacatattcaattggttcgtccggattttatcaacaaggtaaaactctacaaaggc
gacgtaccactgtttactcattatcaaattgagtcgcaaatcgaatctgctttccaacgt
gaagtccgcttaccttctggtggttcaatcgttatcgacccaacggaagcattgacgtca
atcgatatcaactctgcccgtgcaactaagggtagcgatatcgaagagacggcatttaac
accaacctggaagcagctgaagaaattgcccgccagcttcgcctgcgagaccttggtggt
cttgtggttattgactttatcgacatgacgccagttcgccaccagcgcgaagtagaaaac
cgcatgcgtgaagctgttcgttccgaccgtgcgcgcatccagttaagccgtatctcccgc
tttggtcttctggagatgtcacgtcagcgtcttcgtccgtccattggtgaaaccagccag
ggcacctgccctcgttgtaacggtaccggccatgttcgtggcgttgagtcactggcattg
tcggtattgcgtttgatggaagaggaagcaatcaaggataaaaccagtcaggttcatgcc
caggtaccagtacctgttggtacctacctgctaaacgaaaagcgtaatgccgtaggccat
attgaaaagcgtcataacgtaaaagtgttgattcttccgaatcaaaacatggatacccca
cagtatgaggttattcgtgttcgtgatgatgaaactacttttgaggccagttatgaaatg
aaagtcgctgagcctgttgctgaagaagcagtaatgccgaagttccagaaagatgcggta
aaacgtgacgaacctgttctccaaggcatgacggcaccgaaagctgcgcccacgcagaaa
aaagtggttgaagacaagaagccacaacgatctactggcattttcgcagcgattgcagca
ttcttcgcttccttgtttggtagcgaagaaaagccgaagccaaaaggtaagcaacagcat
cgtaaaggttctggtcaggatcagcgtgatcgccgacaacgcaagccacgtcagcaacag
cgccgtaaccgtaatcaggacaagcgcgatacaaatcgtgatacaagcaaagacaataag
gttgcggataaagagcaaaataaatcgccaaaccgtaacgccaagaaaccagccaaacgt
cctgctgaaaaacaggaaaaggtagttaaggaagagaaaattgctgagcgtcgtcaacgt
cgtaatactcgtaagaaagtgcgaatcaacgacaacaagatcgagcagtcacaagtagct
caggaagagcaaaagcaagagtcaaaaccggctaaagaaaaaacagttcgtggtaatcgc
aagcctcgctctaagaagccgacgaccgatgaagcggcattaacaaatactaccgaagag
aatgttgttaccgaagcggagccaatcgaaactgaaggtaagcgtgataaagaaggtaaa
aaccgtacacgtcgttcaccgagacatttacgctctcacggtcaacgtcgtcgcaaggat
aaagagcaaacagctgaaactgagaattccgttgaagcagacgctgaagcgaaatctaaa
gtgacagaaaacgttgttgatgatgcagttgtcgcccgttatccgtccgtagcggagggc
gaagatgccgtgcaaacatctctggatttatccgatgataatgaagcaccggttaaacaa
ccagatacagcagccgttgttgagactgcagaagataccccagtgaaagttgagaataac
tcgcagctagagttagaagttactgcagaagagccgacaaaggcagtaaacgaacctgaa
gtcgagactgttgaaggtaaagctaataccctggtatcagaagatagcgccgaagaggaa
tctaaagccgttgcaaaggctgagattgtaaacgaagagcctgtggttgaagaaactgtt
gttgaagagaccatctcccctgttccggcagctgattccgctgaggaacagacagaagaa
gccatcgttgctgatgagacatcgacagaagaaccagaaactgaggttgaagtcgctgct
ggcgaaggacaatctgaaactgttattgagaagccggctattgcagccaagcttcgtcaa
ttgagcggtaaggccaacgcgcctatgactaagcctgaagccattgctgttgacactaac
attgagttaccgacatctgctttacaaacaaatgaaagagcagactttatacgctctgaa
aaggttgccgctcaggcctccgcaacaaaccatagttcggcaggacctactaaaccgtaa
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