Thalassotalea sp. PS06: FNC98_11275
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Entry
FNC98_11275 CDS
T06100
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thap
Thalassotalea sp. PS06
Pathway
thap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNC98_11275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thap03019
]
FNC98_11275
Enzymes [BR:
thap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNC98_11275
Messenger RNA biogenesis [BR:
thap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNC98_11275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Cas3-like_C_2
CMS1
Flavi_DEAD
SPOR
Motif
Other DBs
NCBI-ProteinID:
QDP01871
LinkDB
All DBs
Position
complement(2542632..2543927)
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AA seq
431 aa
AA seq
DB search
MSFDAIGLPEPLLQAVKSAGYKNLTPIQQKGISAIRSGQDVLASAQTGTGKTAAFSIPII
ESLIKSGASRGSGVKALILAPTRELAKQVKENIEQYCQFTQLTTTLVYGGVGNSEQQKRL
EQGCDIVVATPGRVLEHIQNRSLRLNQLKFVVLDEADRMLDMGFLKPIEEILSGIKQPHQ
TLLFSATFSNKVKNLAKQILQNPRIIETARQNATAKKVRQFVYPVQESRKREMLSELIGR
NNWHQVMVFAGTRDSANELAKELKLDGIKAVLCHGEKSQGARNKALQEFTEGKARVMVAT
DVAARGIDIPDLEYVVNYHLPFLAEDYVHRIGRTGRAGKSGTAISLVSPKDHRFLGDIEA
LIEQKIERVALPGYEFDLNPELEKQQATKEKKAVAKNRYQQIRDKNRSLEKKRAGSANKG
KAKRKSRHSSR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatgctatcggtctgccggaaccattgctgcaggccgtaaaatcagcaggt
tataaaaacctcacgccgattcaacaaaaaggtatttctgcgatacgttcgggtcaggac
gtattggctagtgcgcaaaccggtaccggtaagactgccgcgttttcgattccaattatt
gagtcgttgatcaaatcaggagcatcccggggaagtggcgttaaagccttaatactggcg
ccaactcgcgagctggcgaaacaggttaaagaaaatattgagcagtattgccaatttacc
cagctaaccaccactttggtttatggtggcgttggtaatagtgaacaacaaaaacgactt
gaacagggctgtgatattgtagtcgcaaccccggggcgggtattagaacacattcaaaat
cgttcgctgagattgaatcaacttaagtttgttgtgcttgatgaggcagacagaatgctg
gatatgggctttttgaaaccgattgaagaaattttgtctggcattaagcaaccgcatcaa
accttgctattttctgcaacattttccaataaagttaaaaacctggcaaaacaaattctg
caaaatccaaggatcattgaaaccgccaggcaaaacgcgacggctaagaaagtccgtcag
tttgtttacccggttcaggagagtcgcaagcgggaaatgttgtctgagttaattggccgc
aataactggcatcaggttatggtgtttgctggtacgcgagacagcgccaatgaattggca
aaagagctaaagttagatggtatcaaagccgtgttatgtcacggtgaaaaatcacaaggt
gcccgaaacaaggcattgcaagaattcaccgaaggtaaagctcgggttatggttgccacc
gatgttgccgctcgtggcatcgatataccggatttagaatatgtggtgaattatcacttg
ccgttcctggctgaagattatgtgcatcgcatcggccgcaccgggcgtgctggtaaatct
ggcacggcgatttctctggtatcgccaaaagaccaccgattcctcggcgatatcgaagcg
cttatcgagcagaagatcgaacgtgttgcacttcccggttatgaatttgacttaaatccc
gagctagagaaacagcaggctacgaaagagaaaaaggcggtagcaaaaaatcgttatcaa
caaatccgggataaaaatcgctccctcgagaaaaagcgcgcaggttctgccaataaaggt
aaagctaagcgcaaaagccgtcattccagtcgctga
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