Thalassotalea sp. PS06: FNC98_14855
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Entry
FNC98_14855 CDS
T06100
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thap
Thalassotalea sp. PS06
Pathway
thap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FNC98_14855 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thap03021
]
FNC98_14855 (rpoC)
03400 DNA repair and recombination proteins [BR:
thap03400
]
FNC98_14855 (rpoC)
Enzymes [BR:
thap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FNC98_14855 (rpoC)
Transcription machinery [BR:
thap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FNC98_14855 (rpoC)
DNA repair and recombination proteins [BR:
thap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FNC98_14855 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF2267
Motif
Other DBs
NCBI-ProteinID:
QDP02518
UniProt:
A0A516HFK1
LinkDB
All DBs
Position
complement(3357986..3362218)
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEAGMTTLERGQILTEEEYLDSLEEHGDEFDAKM
GAEAVLALLKDIDLEGEIAQMREELPETGSETKRKKITKRLKLMEAFAQSGNKPEWMIMS
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGGEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGDPIIVPSQDVVLGLYYLTRDRVNGKGEGMVFASPKEAEKAYRTE
TAELHARVKIRITEHKKDEEGNLVPETKIVDTTVGRAILWMVCPDGMPYEIINQTLGKKQ
ISNLINHAYRNLGLKETVIFADHIMYTGFHYAMVAGASVGIDDMVIPDEKYTIIDAAEEE
VKEIQQQFESGLVTAGEKYNKVIDIWSSANEKVSKAMMDNLSKESVENRDGDMEEQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTENDCGTEKGLLMTPLIEGGDVVEPLRERVL
GRVVAQDVLIPGTEDVLFERNTLLDEQKCDTLEEHSVDQVWVRSIITCETDFGICAQCYG
RDLARGHLINEGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNTGTLKL
QSAKFVTDSEGKLVITSRSSELTVIDELGREKERYKVPYGAVLNKADGQAIEAGETIANW
DPHTHPIITEVAGKIKFVDLIESVTMTRQTDELTGLSSIVITDPAQRSSAGKEMRPMVKL
VDAKGNDVMIAGTEIPAQYFLPGNAIVNLEDGVEVNIGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAETTGIIGFGKETKGKRRLLITQPSGEVYEEMIPKWRQLNVFEG
EQVAKGEVIADGPESPHDILRLRGVEHVANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RKCEIMDAGDSEFLKGEQAEVSRVRVANRELEAQGKQPAQYQILMLGITKASLATESFIS
AASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTGYAYHKERQSKRDTEQVEEP
TVSAMDAEQALTDALNADLSGDMPEGLGEE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaacagaagaattcgatggtatt
cgaattggtctagcatcaccagacatgatccgttcatggtctttcggtgaagttaagaag
ccagaaaccatcaactaccgtacttttaagccagaacgcgatggtctgttctgtgctcgt
attttcggcccggttaaagactatgagtgtttgtgtggtaagtacaagcgccttaagcac
cgtggtgtaatttgtgaaaaatgtggcgttgaagtaaccctgactaaagttcgtcgtgat
cgtatgggtcacattgaacttgctagcccggttgctcacatctggttcttaaaatcacta
ccttcccgtattggtttgttactggatatgacgttgcgcgatattgaacgtgttctttat
ttcgaatcttatgttgttaccgaagctggtatgacaacgttagagcgtggacagatcctt
actgaagaagagtatcttgattcgcttgaagagcacggcgatgagttcgatgcgaaaatg
ggtgccgaagcggtacttgcattgcttaaagatatcgatctggaaggtgaaattgcgcag
atgcgtgaggaactgcctgaaaccggtagtgaaaccaagcgtaagaaaatcaccaaacgt
ttgaaattaatggaagcatttgcccagtctggtaacaagccagagtggatgatcatgtcg
gtactgccgatccttccaccagatctacgtcctcttgtaccactagatggtggtcgtttt
gcgacgtcagatctgaacgatctatatcgtcgtgttatcaaccgtaacaaccgtcttaag
cgtcttctagatctggttgcaccagatatcatcgttcgtaacgaaaagcgtatgcttcag
gaatctgttgatgcgctattagataacggtcgtcgtggtcgtgcaattacaggttctaac
aagcgtcctctgaaatctcttgcggatatgatcaagggtaagcaaggtcgtttccgtcag
aacttgcttggtaaacgtgtagactactcaggtcgttctgtaatcactgttggtccaacc
cttcgtttgcaccagtgtggtcttcctaagaagatggcgctagagctattcaagccattt
atctacggtaagcttgaagcacgtggtctggcaacaaccatcaaagccgctaagaaatta
gttgagcgcgaaggtggtgaagtttgggacgtacttgatgaagtaatccgtgagcacccg
gttatgcttaaccgtgcaccgacacttcacagacttggtatccaggcattcgaacccgta
ctaatcgaaggtaaagcgattcacttacacccactagtttgtgcggcgtataacgctgac
ttcgatggtgaccaaatggcggtacacgtaccattaacgctagaagctcagcttgaagct
cgcgcgctaatgatgtctaccaacaacgtactatctccagcgaacggtgaccctatcatc
gtaccttctcaggacgttgtattaggtctttattatctgactcgtgatcgtgtaaacggt
aagggtgaaggcatggtatttgcctctccgaaagaagcagaaaaagcataccgcacagaa
acagcggaattgcatgcgcgcgttaaaatccgtatcactgagcacaaaaaagatgaggaa
ggtaacctggtaccggaaactaagattgtcgacaccactgtaggtcgtgcaattttatgg
atggtgtgtccagatggtatgccttatgagatcatcaaccagacattaggtaagaagcaa
atctctaaccttatcaaccatgcgtatcgtaaccttggtttgaaagaaacggttattttt
gctgaccacatcatgtacaccggtttccactatgcgatggtagcgggtgcatctgttggt
atcgatgatatggttatccctgatgagaaatacacgattatcgacgccgcggaagaagaa
gttaaagagattcagcaacagttcgaatctggtcttgtaaccgcaggtgagaaatacaat
aaagttatcgatatctggtcatctgcgaacgaaaaagtttcgaaagcaatgatggataac
ttatcgaaagaatctgtcgaaaaccgtgacggtgacatggaagagcaggactctttcaac
tctatcttcatgatggccgactcaggtgctcgtggtagtgccgcacagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctctatcattgaaacgccaatcacc
gcaaacttccgtgaaggtttgaacgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtttggcagataccgcgttgaaaacagcgaactctggttatctgactcgtcgtctt
gtagacgttgcacaggatttggttgttactgaaaacgattgtggtaccgaaaaaggccta
ttgatgacaccgctcattgaaggaggtgacgttgtagaaccattgcgcgagcgcgttcta
ggtcgtgttgttgcccaagatgtattaatcccaggcacagaagacgttctgtttgagcgt
aacacgttactagatgagcagaaatgtgacaccttagaagagcactctgtggaccaggta
tgggttcgttcaatcattacctgtgaaactgattttggcatctgtgcccagtgttacggt
cgtgaccttgcccgcggtcaccttattaacgaaggtgaagctatcggtgttgttgcggca
caatcaattggtgagccgggtacacagcttaccatgcgtaccttccacatcggtggtgcg
gcatctcgagcgtctgcagaaaacagcgtgcaggtgaagaacactggtactttgaaactt
caaagtgcgaaattcgtaaccgattcagaaggcaagttggtaatcacctctcgttcttca
gagcttaccgttatcgatgagcttggtcgtgagaaagagcgttataaagttccttacggt
gcggtattaaacaaagctgatggccaggccatcgaagctggtgaaaccatcgctaactgg
gacccgcacactcacccaatcattactgaagtagcgggtaagattaaatttgttgattta
atcgagtcggtaacgatgacgcgtcaaactgatgaattaactggtttgtctagcatcgta
atcacagatccagcacaacgtagctcagcgggtaaagaaatgcgcccaatggttaagcta
gttgatgccaaaggtaatgacgtaatgattgctggtactgaaatcccagctcaatacttc
ttaccaggtaacgcgattgtaaaccttgaagatggtgtagaagttaacatcggtgacgct
ctggcacgtattcctcaagagagttcgaagactcgtgatattaccggtggtctgccacgt
gttgctgacctattcgaagctcgtaaaccgaaagaacctgcgattctagccgaaactacc
ggtatcatcggcttcggtaaagaaaccaaaggtaagcgtcgtcttctaattactcagcca
agcggtgaagtttacgaagaaatgattcctaagtggcgtcagcttaacgtgttcgaaggt
gagcaggtcgctaaaggtgaagtaatcgctgacggtccagagtctccacacgatatcctg
cgcttgcgtggtgttgagcacgttgctaactacatcgttaacgaagtacaagacgtttac
cgtctacaaggtgtaaaaattaacgataagcacattgaagttattgttcgtcaaatgctt
cgcaagtgtgaaatcatggatgccggtgacagtgaattccttaaaggtgagcaagcagaa
gtttcccgcgtacgcgttgctaaccgtgaacttgaagctcaaggcaagcaaccagcacag
tatcagattttgatgctgggtatcaccaaagcttcactggctactgagtcattcatctca
gcagcatcgttccaggaaaccactcgcgttcttactgaagcggcggttgctggtaaaaaa
gatggtctgcgtggtctgaaagaaaacgtaatcgttggtcgcttgattccagcgggtacg
ggttatgcttaccacaaagagcgtcaaagcaaacgcgatactgagcaggttgaagaaccg
acagtttctgcaatggatgcagagcaagcattaacagatgcgcttaacgctgacctttct
ggtgatatgccagaaggtttaggtgaagagtaa
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integrated database retrieval system
