Thalassotalea sp. PS06: FNC98_16015
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Entry
FNC98_16015 CDS
T06100
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
thap
Thalassotalea sp. PS06
Pathway
thap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNC98_16015 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thap03019
]
FNC98_16015 (rhlB)
Enzymes [BR:
thap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNC98_16015 (rhlB)
Messenger RNA biogenesis [BR:
thap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNC98_16015 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QDP02715
UniProt:
A0A516HG12
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All DBs
Position
3624839..3626116
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AA seq
425 aa
AA seq
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MKKTHLTESKFSDFELAPQVVTGLESMGFQYCTTIQAKSLPILLSGKDIAGQAQTGEGKT
IAFLAATFHHLLQKPKSDHNQPRAILMAPTRELAIQIHRDALAMAKSTGLRLGVVYGGEG
YESQRQELQNGVDILIGTCGRLIDYYKQGVYKLNHIEAVVLDEADRMFDLGFIKDIRYLF
RKMPPATERMNMLYSATLSFRVKELAFEHMNDPVSVEVEPEQKTNVRISEELFYPSNKDK
MALLQTLIEEEWPDKAIIFANTKHGCENIYAHLHADNLRVGLLTGDVVQKKRLKILEQFT
QGHVDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGATGHAISFACED
YVFNLPAIEEYIEHSLPVSKYDPDALLTDLPKPKPKQRRHQPRGGRGGKSGKQGNSRPPQ
RRPKH
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacacatttaaccgaaagtaagttttccgacttcgaactggcaccacaagta
gtgacaggccttgagtcgatgggctttcaatactgcacgacgattcaggctaaatcgtta
cctattcttttgtcgggcaaggatattgccggacaagcacaaactggtgaaggtaaaacc
attgcctttctggctgcgacttttcatcacttgctacaaaagccaaagtccgaccataat
cagcctcgcgccatcttaatggccccgacccgggaattggcaattcaaatccatagagat
gctttggccatggccaaatcaacaggattgcgccttggagtggtatatgggggtgagggt
tacgaaagtcaacgccaggaactgcaaaatggtgtggatattttaatcggcacctgtggc
cgactgattgattactacaagcaaggtgtatacaaacttaaccatatcgaagctgtcgtg
ttggatgaagcggatcgtatgttcgatttgggctttatcaaagacattcgctatttgttc
cgtaaaatgccaccggcaactgaacgtatgaatatgctttattcagcaaccttgtcattc
agagtgaaggaactggcattcgagcatatgaacgacccggtaagcgttgaggttgaacct
gagcaaaaaaccaatgtgcgcatctctgaagagctattctacccctcaaataaagataaa
atggcgttattgcaaaccctgattgaagaagagtggccagataaagccatcatctttgct
aataccaagcacggttgcgaaaacatctacgctcatctgcacgcggacaatcttcgagtg
gggttactgactggcgacgtggttcagaaaaagcgtctgaagatcctcgaacaattcact
cagggacatgttgatatcttggttgctactgatgttgctgcacgaggcctgcatattcct
agtgttacccatgtattcaattacgatttaccggacgactgtgaagattatgtgcaccga
ataggtcgtacaggccgcgctggtgcaaccggtcatgctatcagttttgcctgtgaggac
tatgtatttaacctgccggccattgaagaatatattgagcacagtttgccggtcagtaaa
tacgacccagacgcgctgttaaccgatttacctaaaccaaaacctaagcaacgtcgtcat
caacctcgcggcggtcgcggtggcaagagtggtaaacaaggcaatagccgacctccacag
cgtcgtccaaaacactag
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