Thalassobaculum sp. OXR-137: T8K17_05540
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Entry
T8K17_05540 CDS
T09627
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thar
Thalassobaculum sp. OXR-137
Pathway
thar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8K17_05540 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thar03019
]
T8K17_05540 (pnp)
03016 Transfer RNA biogenesis [BR:
thar03016
]
T8K17_05540 (pnp)
Enzymes [BR:
thar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
T8K17_05540 (pnp)
Messenger RNA biogenesis [BR:
thar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T8K17_05540 (pnp)
Transfer RNA biogenesis [BR:
thar03016
]
Prokaryotic type
tRNA degradation factors
T8K17_05540 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WPZ35605
LinkDB
All DBs
Position
1173436..1175553
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AA seq
705 aa
AA seq
DB search
MFDVYRKEIEWGGRTLTLETGKMARQADGAVLARYGDTAVLCTVVAAKTPRPGIDFFPLS
VHYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAH
DLENDPDIVAMVGTSAALCLSGAPFLGPIGGARVGYKDGEYILNPTMDVTRTESELDLVV
AGTEEGVLMVESMASELSEEIMLGAVNFGHDSFQPVIKAIIELAEAAAKDPMDLPESPLD
LDAIRGKLEAACKADLEAAYDEPNKSERQNKLAAAKEKALAAIEDDAEKEAAKGLMKGLE
ADIVRGRILETGKRIDERDTKTVRQIVAEVGLLPRTHGSALFTRGETQAMVIATLGTGQD
EQIIDALEGEYREHFLLHYNFPPFSVGEAGRVGSPGRREIGHGKLAWRAVKPLLPSKEAF
PYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLARPVAGIAMGLIKEGEKFAVLSDI
LGDEDHLGDMDFKVAGTDKGVTALQMDIKITSITREIMKVALEQAKDGRMHILGEMGKAL
SAARDGVSDTAPKMISIKIPVDKIRDVIGSGGKVIREICEVTGAKIDIDDDGTVKIAAVE
QASLDAAHNWVYSLTAEPEVGKIYDGKVVKTLDFGAFVNFLGPKDGLVHISQLTSAKRPE
AVTEVVKEGDKVKVKVIGFDDRGKVKLSMKVVDQETGEDLEAAAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtttaccgcaaggaaatcgaatggggcgggcgcacgctcacccttgagacc
ggcaaaatggcccgccaggccgatggcgccgtcctcgcccgctacggcgacaccgccgtt
ctctgcaccgtggtcgccgccaagacgccgcgcccgggcatcgacttcttcccgctctcg
gtccactacatggagaagacctacgccgcgggtaagatccccggcggcttcttcaagcgc
gagggccgtccgagcgagaaggagaccctgacctcccgcctgatcgaccggccgatccgc
ccgctcttcgtcaagggcttcaagaacgaggtgcaggtgatctgcacggttctcgcccac
gacctggagaacgatccggacatcgtcgccatggtcggcacctccgccgccttgtgcctg
tccggcgccccgttcctgggcccgatcggcggcgcgcgcgtcggctataaggatggcgag
tacatcctgaacccgaccatggacgtgacccgcaccgagagcgagctcgacctggtcgtg
gccggcaccgaagaaggcgtgctcatggtcgagtcgatggcgtcggagctgtcggaagag
atcatgctcggcgccgtcaacttcggtcacgacagcttccagccggtgatcaaggcgatc
atcgagctggccgaggccgccgccaaggatccgatggatctgccggagagcccgctggac
ctggacgccatccgcggcaagctcgaggcggcctgcaaggccgacctggaagccgcctat
gacgagccgaacaagtccgagcgccagaacaagctcgcggccgccaaggagaaggcgctc
gccgcgatcgaggacgacgccgagaaggaagccgccaagggcctgatgaagggccttgag
gccgacatcgtgcgcggccgcatcctggagaccggcaagcgtatcgacgagcgcgacacc
aagaccgtgcgccagatcgtggccgaggtcggcctgctgccccggacccacggctccgcc
ctgttcacccgcggcgagacccaggcgatggtcatcgccaccctgggcaccggccaggac
gagcagatcatcgacgcgctcgagggcgagtaccgcgagcacttcctgctgcactacaac
ttcccgccgttctcggtgggcgaggcgggccgcgtcggctccccgggccgccgcgagatc
ggccacggcaagctggcctggcgggcggtgaagccgctgctgccgagcaaggaagccttc
ccctacaccctgcgcgtggtctccgagatcaccgagtccaacggctcgtcgtccatggcg
acggtctgcggcacctcgctgtcgctgatggatgccggcgtgccgctggcccgtccggtg
gcgggcatcgccatgggcctgatcaaggaaggcgagaagttcgccgtcctgtccgacatc
ctgggtgacgaagatcacctgggcgacatggacttcaaggtcgccggcaccgacaagggc
gtcaccgccctgcagatggacatcaagatcacgtccatcacccgcgagatcatgaaggtc
gcgctggagcaggcgaaggacggccggatgcacatcctgggcgagatgggcaaggccctg
tccgcggcccgcgacggcgtctccgacaccgcgccgaagatgatctcgatcaagatcccg
gtcgacaagatccgcgacgtgatcggctcgggcggcaaggtgatccgcgagatctgcgaa
gtcaccggtgcgaagatcgatatcgacgacgacggcaccgtgaagatcgccgccgtcgag
caggcctctctcgacgccgcccataactgggtctactcgctgacggccgagccggaagtg
ggcaagatctacgacggcaaggtcgtgaagaccctcgacttcggcgcctttgtgaacttc
ctcggcccgaaggacggtctggtgcatatcagccagctgacctcggccaagcgtccggaa
gcggtcaccgaggtcgtcaaggaaggcgacaaggtgaaggtgaaggtcatcggcttcgac
gatcgcggcaaggtcaagctgtcgatgaaggtcgtcgatcaggagaccggcgaagatctg
gaagccgctgccgagtaa
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