Thalassobaculum sp. OXR-137: T8K17_08465
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Entry
T8K17_08465 CDS
T09627
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
thar
Thalassobaculum sp. OXR-137
Pathway
thar02020
Two-component system
thar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
T8K17_08465 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
T8K17_08465 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thar03021
]
T8K17_08465 (rpoN)
Transcription machinery [BR:
thar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
T8K17_08465 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
Topo-V_HhH_2_2nd
HTH_IclR
HTH_38
LacI
Motif
Other DBs
NCBI-ProteinID:
WPZ36167
LinkDB
All DBs
Position
1797440..1799047
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AA seq
535 aa
AA seq
DB search
MALSQRLDLRQGQSLVLTPQLQQAIKLLQLNNMELAEYVEGELSQNPLLDRDEGDGPATL
DAVAGDNLLRHESEAAAPAPEGDGFGDAVDDGGRDTLDRTTTDAIPASGDDPNDIDYDNN
WGSAGIEETDGIAAIGSGDLSSWSTAGGGGGGIVGDDDFGLEQMVADSKTLRDHLLDQMS
LEFDEPRDRLIAAHLIDMVDAAGYLSGDIESLAQQLGTDLDEVERVLKRVQGLDPAGVLA
RDLKECLALQLADRNRLDPCMQALLDNLDMLARREVAALKKVCGVDDEDLTDMIGEIKAL
NPKPGEAFDRPLDQPVVPDVLIRRGADGKWVVELNTDTLPRVLVNNAYYAEVSKVAAKDR
KAKEYLSECLQSANWLTRSLHQRATTILKVSTEIVRQQDAFFEHGIQYLRPLVLRDIADA
IGMHESTVSRVTSNKFAATPRGIFELKYFFTSAIASAAGGEAHSAEAVRHRIKGLIDGEP
ANAILSDDRIVELLRADGVDIARRTVAKYREAMRIPSSVQRRREKVGQAVMAGRR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtcgcaacgccttgacctccgccagggacagtctcttgtcctcacgccgcag
ctgcagcaggcgatcaagctgttgcagctcaacaacatggaactggcggagtatgtcgag
ggcgagctgtcgcagaatccgctgctcgacagggacgagggcgacggcccggcgacgctc
gacgcggtggccggcgacaacctgctgcgtcacgagagcgaggcggcggccccggcgccc
gaaggcgacggtttcggcgatgcggtggacgacggtggccgcgatacgctcgaccggacg
acgaccgacgcgatcccggcctccggcgacgatcccaacgacatcgactacgacaacaac
tggggcagcgccggcatcgaggagaccgacggcatcgccgcgatcggctcgggcgacctg
tcgagctggagcaccgccggcgggggcggcggcgggatcgtcggcgacgacgatttcggc
ctggaacagatggtggcggactccaagaccctgcgcgaccatctgctcgaccagatgtcg
ctggagttcgacgagccgcgcgaccggctgatcgccgcccatctgatcgacatggtcgac
gccgccggctacctgtccggcgacatcgagtccctggcacagcagctcggcaccgacctg
gacgaggtggagcgggtgctgaagcgggttcaggggctggatccggccggcgtgctggcc
cgcgatctgaaggaatgtctggcgctgcagctcgccgacaggaaccgcctcgatccctgc
atgcaggcgctgctcgacaatctcgacatgctggcccgccgcgaggtcgccgccctgaag
aaggtctgcggcgtcgacgacgaggatctgaccgacatgatcggcgagatcaaggcgttg
aacccgaagccgggcgaggcgttcgaccggccgctcgaccagccggtggtgcccgacgtg
ctgatccggcgcggggccgacggcaaatgggtggtcgagctgaacaccgacaccctgccc
cgggttctggtgaacaacgcctattacgccgaggtgtccaaggtcgcggccaaggaccgc
aaggccaaggaatacctgtccgaatgtttgcagtcggcgaactggctgacccgttcgctg
caccagcgggcgacgacgatcctcaaggtctccaccgagatcgtgcggcagcaggacgcc
ttcttcgaacacggcatccagtatctgcggccgctggttctgcgcgacatcgccgacgcc
atcggcatgcacgagagcacggtcagccgggtgaccagcaacaagttcgcggccaccccc
cgcggcatcttcgaactgaagtacttcttcacctccgccatcgcctcggcggccggcggc
gaggcccattcggccgaggcggtgcggcatcggatcaaggggctgatcgatggcgagccg
gccaacgccatcctgtccgacgaccggatcgtcgaactattgcgggcagacggtgtcgac
atcgcccggagaacggttgctaagtacagggaagcaatgcgcattccctcaagcgtgcaa
cgccgccgcgagaaggtcggacaggcggtgatggccggccgcagatag
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