Thalassobaculum sp. OXR-137: T8K17_20410
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Entry
T8K17_20410 CDS
T09627
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thar
Thalassobaculum sp. OXR-137
Pathway
thar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8K17_20410 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thar03019
]
T8K17_20410 (rnr)
03016 Transfer RNA biogenesis [BR:
thar03016
]
T8K17_20410 (rnr)
Enzymes [BR:
thar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
T8K17_20410 (rnr)
Messenger RNA biogenesis [BR:
thar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T8K17_20410 (rnr)
Transfer RNA biogenesis [BR:
thar03016
]
Prokaryotic type
tRNA degradation factors
T8K17_20410 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
WPZ33588
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All DBs
Position
4381034..4383280
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AA seq
748 aa
AA seq
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MSDRDVARPPAQLPTREQILAFVEDSPTPVGRREIARAFDVKGPLRAELRGLLKEMADAG
DLDMGRKRKVAPPGALPEVTVLEVTGTDKDGEVMARAVGREAEEPAPRIHILPDRRSGPM
GSGDRALCRLERAGESFYIARVIRRLGRTAARTFGVFEKTADGGRVRPTDKKAKSEIRIP
RGDEKEAVTGDLVTVEIMPKSRLGMPLGRVIERFAGAADPRSFSRIAIHEQEIPDVFPEA
AVELAEKAKPVALGKRTDLRAIPLVTIDGIDARDFDDAVFAEADEDPANPGGYRLLVAIA
DVAHYVRPGDPLDREALKRGNSVYFPDRVVPMLPEALSNGLCSLRPDEDRACMAVEIVID
SEGNKRRHAFMRGLMRSRARLTYRQVQQARDGGSAEGIPDGVLEPLYGAFAALRKARTER
GALDIELPEKKVILDEAGNITEIGIRERLDAHMLIEEFMVLANVCAAETLEDRRQPCMYR
VHETPDPEKVAALSEVLEGLGIAFAKGQVIRPKAFNGVLAKVKGEPHERMVNELVLRSQS
QAVYAPENLGHFGLALTKYAHFTSPIRRYSDLLVHRALIRGLKFGEDGLRPDDDSEFQEW
GEHISMTERRAAVAERTTMDRYLARHLSDRVGGIFPGRINGVTKFGVFVTLDETGADGLV
PIRSLPDDYYDHDDVHHTLTGRSHGWIFRLGDRVEVRLVDADAASGGIVVEIVSGGEQGT
APRGGRRHGGPKRRPQARGKPPKGRKRR
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgaccgcgacgtggcccgtccccccgcccagcttcccacccgtgagcagatcctc
gccttcgtcgaggacagtcccacccccgtcggccgtcgcgagatcgcccgcgccttcgac
gtgaagggccccctgcgcgccgagctgcgcggcctgctcaaggagatggccgacgccggc
gacctcgatatggggcgcaagcgcaaggtcgcgccgccgggcgccctgccggaagtgacg
gtgctggaagtcaccggcaccgacaaggacggcgaggtcatggcccgcgccgtcggccgc
gaggccgaggagccggccccgcgcatccatatcctgcccgaccgccgctccggccccatg
ggctccggcgaccgcgccctgtgccgcctggagcgcgccggcgagagcttctacatcgcc
cgggtgatccgccgcttgggccgcaccgccgcgcgtaccttcggcgtgttcgagaagacc
gccgatggcggccgggtccgaccgaccgacaagaaggcgaaatcggagatccggatcccc
cggggcgacgagaaggaagcggtcaccggcgacctggtgaccgtggagatcatgcccaaa
agccggctcggcatgccgctcggccgggtgatcgagcgcttcgccggggccgccgatccg
cgctccttcagccggatcgccatccatgagcaggaaatccccgacgtctttcccgaggcg
gcggtcgagctggcggagaaggccaagccggtggcgctcggcaagcgcaccgacctgcgc
gccatccccctggtcaccatcgacggcatcgacgcccgcgacttcgacgacgcggtcttc
gccgaggcggacgaggatccggcgaacccgggcggctaccgcctgctggtggccatcgcc
gacgtggcccattacgtgcggcccggcgatccgctggaccgcgaggcgctgaagcgcggc
aactcggtctatttccccgaccgggtcgtgccgatgctgcccgaggccctgtccaacggc
ctgtgctccctgcgtcccgacgaggaccgcgcctgcatggccgtcgagatcgtcatcgat
tccgagggcaataagcgccgtcatgccttcatgcgggggctgatgcgctcccgggcccgc
ctcacctatcgccaggtccagcaggcccgcgacggcggcagcgccgaggggatccccgac
ggcgtgctcgagccgctctacggcgccttcgccgccctgcgcaaggcgcgcacggaacgc
ggcgccctcgatatcgagctgcccgagaagaaggtcatcctcgacgaggccggcaacatc
accgaaatcggcatccgcgagcgcctcgacgcccatatgctgatcgaggagttcatggtg
ctggccaatgtctgcgccgccgagaccctggaggaccgccgccagccctgcatgtaccgg
gtgcacgagacccccgatccggagaaggtcgccgccctgtccgaggtgttggagggactc
ggcatcgccttcgccaagggtcaggtgatccggccgaaggcgttcaacggcgttctcgcc
aaggtgaagggcgagccgcacgagcgcatggtcaacgagctggtcctgcgttcccagtcc
caggcggtctacgcccccgagaatctgggccacttcggcctggcgctgaccaaatacgcc
catttcacctcgccgatccgacgctattcggatctgctggtgcaccgcgcgctgattcgc
ggcctgaaattcggcgaggacgggctgcggccggacgacgacagcgagttccaggaatgg
ggcgagcacatctccatgaccgagcgccgcgccgccgtggccgagcgcaccaccatggac
cgctacctcgcccgccatctgtcggaccgggtcggcgggatcttccccggccggatcaac
ggcgtgaccaagttcggcgttttcgtcaccctggacgagaccggggcagacgggctggtg
ccgatccgctccctgccggacgattattacgaccacgacgacgtgcaccacacgctcacc
gggcgctcgcatggctggattttccgcctgggcgaccgagtcgaggtgcggctggtggat
gccgatgcggcctccgggggaatcgtcgtcgagatcgtgtccggcggcgagcagggcacg
gccccgcgcggcggccggcgccacggcggtccaaaacgccgcccgcaggcccgcggcaag
ccgcccaagggccgcaaacggcgctga
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