Thalassobaculum sp. OXR-137: T8K17_20460
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Entry
T8K17_20460 CDS
T09627
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
thar
Thalassobaculum sp. OXR-137
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thar03016
]
T8K17_20460 (rnd)
Enzymes [BR:
thar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
T8K17_20460 (rnd)
Transfer RNA biogenesis [BR:
thar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
T8K17_20460 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WPZ33598
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All DBs
Position
4392627..4393787
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AA seq
386 aa
AA seq
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MTLVTDTETLAAVCQRIADEPYVAIDTEFLRDKTYYSRLCLVQLAGKEDVVAVDTLAPDI
DLTPLFELMANPNVLKVFHAARQDIEIFVHMTGQVPAPMFDTQIAAMVCGFGDAVSYDRL
VRAITGANIDKTSRFTDWSHRPLSQHQIDYALADVIHLRPCYERLAKRLAKTKRSEWLDE
EMAVLTDVATYVTEPEESWKRLKTRSTKPKFLAVLRALSAWREVEAQSRDIPRSRVLRDD
ALVDIAAQAPTSADELSRSRSFNRESANGKTGRAILEAVQSALESPKETWPKVSDQRDKP
QGRQPVAELLRVLLKVQCDAHDVAPKLVASADDLDAIAADDNADVPAMKGWRREVFGDAA
LAVKHGKLAFAFDPEKDRLALIEVPE
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgacactcgtcacggacacggaaaccctcgccgccgtttgccagcgaatcgcggacgag
ccttacgttgcgatcgacaccgaatttctgcgcgacaagacctactactcccgactctgc
ctggtgcagctcgccggcaaggaggatgtggtcgcggtggatacccttgccccggatatc
gacctgacgccgctgttcgagctgatggccaatcccaacgtgctgaaggttttccacgcg
gcgcgccaggacatcgagatcttcgtgcacatgaccggccaggtgccggcgccgatgttc
gacacccagatcgccgccatggtctgcgggttcggcgacgcggtcagctacgaccggctg
gtccgggcgatcaccggcgcgaacatcgacaagacctcgcgcttcaccgactggagccac
aggccactgtcgcagcaccagatcgactacgcgctggcggacgtgatccatctgcgcccc
tgctacgagcgcctggcgaagcggctggccaagaccaagcgctcggaatggctggacgag
gagatggcggtcctgaccgacgtcgccacctacgtcaccgagccggaagaatcctggaag
cggctgaagacccgctccaccaagccgaaattcctcgccgtgctgcgggcgctgtccgcg
tggcgcgaggttgaggcgcagtcccgcgacatcccccgcagccgcgtcctgcgcgacgac
gccctggtcgacatcgccgcccaggcgccgacctcggccgacgagctgtcgcgctcgcgg
tcgttcaaccgggaatcggcgaacggcaagaccggccgggcgatcctcgaggccgttcag
tccgcgctggagtcgccgaaggaaacatggcccaaggtctccgaccagcgcgacaagccc
cagggccgtcagccggtggccgaactgctgcgggtgctcctgaaggtgcagtgcgatgcc
catgacgtggcgccgaagctggtcgccagcgccgacgacctggacgccatcgccgccgac
gacaatgccgacgtcccggccatgaagggctggcggcgcgaggtgttcggcgatgccgcg
ctcgcggtcaaacacggcaagctggccttcgccttcgatccggagaaggaccgcctggcc
ctgatcgaggttcccgagtag
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