Thalassobaculum sp. OXR-137: T8K17_24835
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Entry
T8K17_24835 CDS
T09627
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thar
Thalassobaculum sp. OXR-137
Pathway
thar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T8K17_24835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thar03021
]
T8K17_24835 (rpoC)
03400 DNA repair and recombination proteins [BR:
thar03400
]
T8K17_24835 (rpoC)
Enzymes [BR:
thar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T8K17_24835 (rpoC)
Transcription machinery [BR:
thar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T8K17_24835 (rpoC)
DNA repair and recombination proteins [BR:
thar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T8K17_24835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF294
Motif
Other DBs
NCBI-ProteinID:
WPZ34445
LinkDB
All DBs
Position
complement(5350526..5354707)
Genome browser
AA seq
1393 aa
AA seq
DB search
MNELVNIFGQPSGPQSFDNIQISIASPDRVKSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLKDLERVLYFENFVVTDPLLSPLKEKQLLSEEEYYQAQDDYGEDAFVAQ
IGAEALKTMLSRLDMEVEQETVRVELRETGSEAKRKKLVKRLKIIEAFQESNSRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
DLMLHQCGLPKKMALELFKPFIYSKLELYGMASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLTMERNNQPGEGMAFADPAEVDHAVDT
GVVNLHTKVKARVTTYDENGEKVTKRVETTPGRLKLALLLPDNPKLRFEMINRLMTKKEV
SNVIDMVYRHCGQKETVIFADRLMGLGFGHACRAGISFGKDDLVIPEAKQGLVDQANEEV
KQFEQQYLDGLITQGEKYNKVVDVWSRCTDQVAEEMMAVIKEDDGINPVNAVWMMAHSGA
RGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIITEVDCGTERGLTVRAVIDGGEVIENLGDRILGRTTLEDVLD
PLSGDVVVKKGEIIDEALVEAVERAGIDSVLIRSVLTCKTHPGVCAACYGRDLARGTPVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSTVEASIGAQVKLHNRNVVTNSD
GVLVVMSRNTEIILADEQGRERARHRVPYGAKLLVDDGVMVEPGQKMAEWDPYTIPIITE
REGIAHYVDLVDGLSMREVTDEATGISSRVVVDWKQQPRGNDLKPRVTLRDEAGEVVQLA
NGLEARYFMSVDAILSVENGAQVKAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAVIAEADGRVEFGKDYKTKRRVVVRPVEEGADPIEYMIPKGKHLAVHEGDFVQKGDMLL
DGARVPHDILNIMGVEALADYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEVMEAGD
TTLLLGETIDRDEYEEANEKALAENLRPAVAKPVLQGITKASLQTKSFISAASFQETTRV
LTEAAVSGKHDSLDGLKENVIVGRLIPAGTGSVMNRLRRVAADRDRALAPAAPAAPADDA
AKLPAEGEVTAAE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttggtgaacatcttcggtcagccgagcggcccgcagagcttcgacaatatc
cagatctcgatcgcgagcccggatcgcgtgaagtcgtggtcgttcggcgagatcaagaag
ccggagaccatcaactaccggaccttcaagccggagcgcgacggtctgttctgcgcccgg
atcttcggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaagtac
cgcggcatcatctgcgagaagtgcggcgtcgaagtcacgctctccaaggtccgccgcgag
cgcatgggccatatcgacctggcctcgccggtcgcccatatctggttcctgaagtccctg
ccgagccgcatcggtctgctgctcgacatgaccctgaaggacctggagcgggttctgtac
ttcgagaacttcgtggtcaccgacccgctgctctcgccgctgaaggagaagcagctcctc
agcgaggaggagtactaccaggcgcaggacgattacggcgaggacgccttcgtcgcccag
atcggcgccgaggccctgaagaccatgctgtcccgcctcgacatggaagtcgagcaggag
accgtgcgcgtggagttgcgggaaaccggctcggaagccaagcgcaagaagctggtcaag
cgtctgaagatcatcgaggcgttccaggagtccaactcccgtccggaatggatgatcctg
gacgtggtgccggtcattccgccggaactgcgcccgctcgtcccgctggacggcggccgc
ttcgcgacctccgacctgaacgacctgtaccgccgggtgatcaaccggaacaaccgcctg
aagcgcctgatggagcttcgcgcgccggacatcatcgtgcgcaacgagaagcgcatgctg
caggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggcgcc
aataagcgtccgctgaagtccctcagcgacatgctgaagggtaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactactccggccggtcggtcatcgtggtcggtccg
gacctgatgctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccg
ttcatctactccaagctcgagctctacggcatggcgagcacgatcaaggccgccaagcgc
atggtcgagaaggagcgtcccgaagtgtgggacatcctggaagaggtgatccgcgagcac
ccggtcatgctgaaccgggcgccgaccctgcaccgtctcggcattcaggcgttcgagccg
aagctggtcgagggcaaggcgatccagctgcacccgctggtctgcacggccttcaacgcc
gacttcgacggcgaccagatggcggtccacgtgccgctgtcgctggaagcccagctcgaa
gcccgcgtgctcatgatgtcgaccaacaacatcctgagcccggccaacggcaagccgatc
atcgtgccgtcccaggacatcgttctgggcctgtactacctgaccatggagcggaacaac
cagccgggcgagggcatggccttcgccgatccggccgaggtggatcacgcggtcgatacc
ggtgtcgtcaacctgcacaccaaggtgaaggcccgcgtcacgacctatgacgagaacggc
gagaaggtgaccaagcgcgtggaaaccacgccgggccgcctgaagctggctctgctgctc
cccgacaatccgaagctgcgcttcgagatgatcaatcgcctgatgacgaagaaggaagtc
tccaacgtcatcgacatggtgtaccgccactgcggccagaaggagacggtgatcttcgcc
gaccgcctgatgggcctcggcttcggtcacgcctgccgcgcgggcatctcgttcggcaag
gacgacctggtcatccccgaggccaagcagggcctcgtcgatcaggcgaacgaggaggtc
aagcagttcgagcagcagtatctcgacggcctgatcacccagggcgagaagtacaacaag
gtcgtcgacgtctggtcgcgctgcaccgatcaggtggccgaagagatgatggcggtcatt
aaggaagacgacggcatcaacccggtgaacgccgtgtggatgatggcgcattccggtgcc
cgtggttccgccgcccagatcaagcagctcgccggtatgcgcggcctcatggccaagccg
tcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggcctgaccgtgctc
gagtacttcaactcgacccacggtgcccgtaagggtctggccgacacggcgctcaagacc
gcgaactcggggtacctgacccgccgtctggtcgacgtggcccaggactgcatcatcacc
gaagtcgattgcggcaccgagcgcggcctgaccgtgcgcgccgtgatcgacggcggcgag
gtgatcgagaatctcggcgaccgtatcctcggccgcaccaccctggaggacgtcctcgac
ccgctcagcggcgacgtggtcgtcaagaagggcgagatcatcgacgaggccctggtcgag
gcggtcgaacgcgccggcatcgactcggtgctgatccgctcggtcctgacctgcaagacc
catccgggcgtctgcgcggcctgctacggccgtgacctggcgcgcgggacgccggtgaat
atcggcgaggcggtcggcgtcatcgccgcccagtccatcggcgagccgggcacccagctc
accatgcggacgttccacatcggcggcgccgcccagcgcggtgccgagcagtccaccgtc
gaggcgtcgatcggcgctcaggtgaagctgcacaaccgtaacgtcgtcaccaactccgac
ggcgtgctggtggtcatgagccggaacaccgagatcatcctggccgacgagcagggccgc
gagcgcgcacgccaccgcgtgccgtacggggccaagctcctggtcgacgacggcgtcatg
gtcgagccgggccagaagatggccgagtgggatccgtacaccattccgatcatcaccgag
cgggaaggtatcgcccactacgtcgatctcgtggacggcctgtccatgcgcgaggtcacc
gacgaggcgacgggtatctcgtcccgcgtcgtggtcgactggaagcagcagccgcgcggc
aacgatctgaagccgcgtgtcaccctgcgtgacgaggccggcgaggtggtacagctcgcc
aacggcctggaggcccgctacttcatgtcggtcgacgccatcctgtcggtcgagaacggc
gcccaggtgaaggcgggcgacgtgctggcgcgtatcccgcgcgagtcgtcgaagacccgc
gacatcaccggtggtctgccgcgcgtggccgagctgttcgaggcacggcgtccgaaggac
ttcgcggtcatcgcggaggccgacggccgggtcgagttcggcaaggactacaagaccaag
cgtcgggtcgtcgtccgtccggtcgaggagggcgcggacccgatcgaatacatgatcccg
aagggcaagcacttggcggtgcacgagggcgacttcgtgcagaagggtgacatgctgctc
gacggggcgcgcgtcccgcacgacatcctgaacatcatgggcgtcgaggcgctggccgac
tatctcatcaacgagatccaggaggtctaccgtctgcagggcgtgaagattaacgacaag
cacatcgaggtgatcgttcgccagatgctgcagaaggtcgaagtgatggaggccggcgac
accacgctgctgctcggcgagaccatcgaccgcgacgagtacgaggaggccaacgagaag
gccctggcggagaacctccgtccggccgtggccaagccggtgctccagggcatcaccaag
gcgtcgctgcagaccaagtcgttcatctccgccgcgtcgttccaggagaccacccgcgtc
ctcaccgaggcggcggtttccggcaagcacgacagcctcgacggtctcaaggagaacgtc
atcgtcggccgcctgatcccggccggtacgggcagcgtgatgaatcgcctgcgccgagtc
gccgccgatcgcgaccgtgcgctggccccggccgctccggcggcccccgcggacgacgca
gccaagctgccggccgagggcgaggtgaccgccgccgagtaa
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